Genome Property Definition Page

AccessionGenProp0055
Namepolyhydroxyalkanoic acids
TypeSYSTEM
DescriptionPolyhydroxyalkanoic acids (PHAs) are high molecular weight carbon and energy storage molecules, linear polymers in which the monomeric units have the form -[O-CHR(CH2)xCO]-. The aliphatic polyesters occur in inclusion bodies in various bacteria and archaea. The most common form is polyhydroxybutyric acid, -[0-CHCH3-CH2-CO]-. Typical biosynthetic enzymes include ketothiolases, reductases, and PHA synthases. Additional proteins may include small PHA inclusion body-associated proteins. Typical gene symbols include pha (phb for polyhydroxybutyrate) A (ketothiolase), B (reductase), C (synthase), Z (depolymerase), E (second subunit of heterodimeric-type PHA synthase), R, and Q.
Parent PropertyGenProp0142: catabolism
GenProp0157: storage polymer systems
GenProp0186: storage and structural polymer biosynthesis
GenProp0142: catabolism
GenProp0157: storage polymer systems
GenProp0186: storage and structural polymer biosynthesis
GenProp0142: catabolism
GenProp0157: storage polymer systems
GenProp0186: storage and structural polymer biosynthesis
Gene Ontology TermGO:0006112: energy reserve metabolic process (biological_process)
GO:0006112: energy reserve metabolic process (biological_process)
GO:0006112: energy reserve metabolic process (biological_process)
GO:0006112: energy reserve metabolic process (biological_process)
GO:0006112: energy reserve metabolic process (biological_process)
GO:0006112: energy reserve metabolic process (biological_process)
GO:0006112: energy reserve metabolic process (biological_process)
GO:0006112: energy reserve metabolic process (biological_process)
GO:0006112: energy reserve metabolic process (biological_process)

Components
Step NameStep NumRequiredEvidence (Method)Evidence Go Terms
acetoacetyl-CoA reductase2YESTIGR01829 (HMM): acetoacetyl-CoA reductase
TIGR01829 (HMM): acetoacetyl-CoA reductase
acetoacetyl-CoA reductase2YESTIGR01829 (HMM): acetoacetyl-CoA reductase
TIGR01829 (HMM): acetoacetyl-CoA reductase
acetoacetyl-CoA reductase2YESTIGR01829 (HMM): acetoacetyl-CoA reductase
TIGR01829 (HMM): acetoacetyl-CoA reductase
3-hydroxybutyrate dehydrogenase3-HB-DHNOTIGR01963 (HMM): 3-hydroxybutyrate dehydrogenase
TIGR01963 (HMM): 3-hydroxybutyrate dehydrogenase
3-hydroxybutyrate dehydrogenase3-HB-DHNOTIGR01963 (HMM): 3-hydroxybutyrate dehydrogenase
TIGR01963 (HMM): 3-hydroxybutyrate dehydrogenase
3-hydroxybutyrate dehydrogenase3-HB-DHNOTIGR01963 (HMM): 3-hydroxybutyrate dehydrogenase
TIGR01963 (HMM): 3-hydroxybutyrate dehydrogenase
poly(R)-hydroxyalkanoic acid synthasePHA_synYESTIGR01838 (HMM): poly(R)-hydroxyalkanoic acid synthase, class I
TIGR01839 (HMM): poly(R)-hydroxyalkanoic acid synthase, class II
TIGR01836 (HMM): poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit
TIGR01834 (HMM): poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit
TIGR01838 (HMM): poly(R)-hydroxyalkanoic acid synthase, class I
TIGR01839 (HMM): poly(R)-hydroxyalkanoic acid synthase, class II
TIGR01836 (HMM): poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit
TIGR01834 (HMM): poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit
poly(R)-hydroxyalkanoic acid synthasePHA_synYESTIGR01838 (HMM): poly(R)-hydroxyalkanoic acid synthase, class I
TIGR01839 (HMM): poly(R)-hydroxyalkanoic acid synthase, class II
TIGR01836 (HMM): poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit
TIGR01834 (HMM): poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit
TIGR01838 (HMM): poly(R)-hydroxyalkanoic acid synthase, class I
TIGR01839 (HMM): poly(R)-hydroxyalkanoic acid synthase, class II
TIGR01836 (HMM): poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit
TIGR01834 (HMM): poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit
poly(R)-hydroxyalkanoic acid synthasePHA_synYESTIGR01838 (HMM): poly(R)-hydroxyalkanoic acid synthase, class I
TIGR01839 (HMM): poly(R)-hydroxyalkanoic acid synthase, class II
TIGR01836 (HMM): poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit
TIGR01834 (HMM): poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit
TIGR01838 (HMM): poly(R)-hydroxyalkanoic acid synthase, class I
TIGR01839 (HMM): poly(R)-hydroxyalkanoic acid synthase, class II
TIGR01836 (HMM): poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit
TIGR01834 (HMM): poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit
esterase, PHB depolymerase family, or polyhydroxyalkanoate depolymerase, intracellulardepolaseYESTIGR01840 (HMM): esterase, PHB depolymerase family
TIGR01849 (HMM): polyhydroxyalkanoate depolymerase, intracellular
TIGR02240 (HMM): poly(3-hydroxyalkanoate) depolymerase
TIGR01840 (HMM): esterase, PHB depolymerase family
TIGR01849 (HMM): polyhydroxyalkanoate depolymerase, intracellular
TIGR02240 (HMM): poly(3-hydroxyalkanoate) depolymerase
GO:0006112: energy reserve metabolic process
GO:0006112: energy reserve metabolic process
esterase, PHB depolymerase family, or polyhydroxyalkanoate depolymerase, intracellulardepolaseYESTIGR01840 (HMM): esterase, PHB depolymerase family
TIGR01849 (HMM): polyhydroxyalkanoate depolymerase, intracellular
TIGR02240 (HMM): poly(3-hydroxyalkanoate) depolymerase
TIGR01840 (HMM): esterase, PHB depolymerase family
TIGR01849 (HMM): polyhydroxyalkanoate depolymerase, intracellular
TIGR02240 (HMM): poly(3-hydroxyalkanoate) depolymerase
GO:0006112: energy reserve metabolic process
GO:0006112: energy reserve metabolic process
esterase, PHB depolymerase family, or polyhydroxyalkanoate depolymerase, intracellulardepolaseYESTIGR01840 (HMM): esterase, PHB depolymerase family
TIGR01849 (HMM): polyhydroxyalkanoate depolymerase, intracellular
TIGR02240 (HMM): poly(3-hydroxyalkanoate) depolymerase
TIGR01840 (HMM): esterase, PHB depolymerase family
TIGR01849 (HMM): polyhydroxyalkanoate depolymerase, intracellular
TIGR02240 (HMM): poly(3-hydroxyalkanoate) depolymerase
GO:0006112: energy reserve metabolic process
GO:0006112: energy reserve metabolic process
phasin family protein or poly(hydroxyalcanoate) granule-associated proteingransurfYESTIGR01841 (HMM): phasin family protein
TIGR01837 (HMM): poly(hydroxyalkanoate) granule-associated protein
TIGR01985 (HMM): phasin
TIGR02809 (HMM): phasin family protein
TIGR01841 (HMM): phasin family protein
TIGR01837 (HMM): poly(hydroxyalkanoate) granule-associated protein
TIGR01985 (HMM): phasin
TIGR02809 (HMM): phasin family protein
GO:0006112: energy reserve metabolic process
GO:0006112: energy reserve metabolic process
GO:0006112: energy reserve metabolic process
GO:0006112: energy reserve metabolic process
phasin family protein or poly(hydroxyalcanoate) granule-associated proteingransurfYESTIGR01841 (HMM): phasin family protein
TIGR01837 (HMM): poly(hydroxyalkanoate) granule-associated protein
TIGR01985 (HMM): phasin
TIGR02809 (HMM): phasin family protein
TIGR01841 (HMM): phasin family protein
TIGR01837 (HMM): poly(hydroxyalkanoate) granule-associated protein
TIGR01985 (HMM): phasin
TIGR02809 (HMM): phasin family protein
GO:0006112: energy reserve metabolic process
GO:0006112: energy reserve metabolic process
GO:0006112: energy reserve metabolic process
GO:0006112: energy reserve metabolic process
phasin family protein or poly(hydroxyalcanoate) granule-associated proteingransurfYESTIGR01841 (HMM): phasin family protein
TIGR01837 (HMM): poly(hydroxyalkanoate) granule-associated protein
TIGR01985 (HMM): phasin
TIGR02809 (HMM): phasin family protein
TIGR01841 (HMM): phasin family protein
TIGR01837 (HMM): poly(hydroxyalkanoate) granule-associated protein
TIGR01985 (HMM): phasin
TIGR02809 (HMM): phasin family protein
GO:0006112: energy reserve metabolic process
GO:0006112: energy reserve metabolic process
GO:0006112: energy reserve metabolic process
GO:0006112: energy reserve metabolic process
predicted granule componentgrn_prdNOTIGR02610 (HMM): putative polyhydroxyalkanoic acid system protein
TIGR02610 (HMM): putative polyhydroxyalkanoic acid system protein
GO:0006112: energy reserve metabolic process
GO:0006112: energy reserve metabolic process
predicted granule componentgrn_prdNOTIGR02610 (HMM): putative polyhydroxyalkanoic acid system protein
TIGR02610 (HMM): putative polyhydroxyalkanoic acid system protein
GO:0006112: energy reserve metabolic process
GO:0006112: energy reserve metabolic process
predicted granule componentgrn_prdNOTIGR02610 (HMM): putative polyhydroxyalkanoic acid system protein
TIGR02610 (HMM): putative polyhydroxyalkanoic acid system protein
GO:0006112: energy reserve metabolic process
GO:0006112: energy reserve metabolic process
PHA inclusion probable storage protein PhaPincl_PNOTIGR02131 (HMM): polyhydroxyalkanoic acid inclusion protein PhaP
TIGR02131 (HMM): polyhydroxyalkanoic acid inclusion protein PhaP
GO:0006112: energy reserve metabolic process
GO:0006112: energy reserve metabolic process
PHA inclusion probable storage protein PhaPincl_PNOTIGR02131 (HMM): polyhydroxyalkanoic acid inclusion protein PhaP
TIGR02131 (HMM): polyhydroxyalkanoic acid inclusion protein PhaP
GO:0006112: energy reserve metabolic process
GO:0006112: energy reserve metabolic process
PHA inclusion probable storage protein PhaPincl_PNOTIGR02131 (HMM): polyhydroxyalkanoic acid inclusion protein PhaP
TIGR02131 (HMM): polyhydroxyalkanoic acid inclusion protein PhaP
GO:0006112: energy reserve metabolic process
GO:0006112: energy reserve metabolic process
regulatory subunit of PHA synthasereg_subNOTIGR02132 (HMM): polyhydroxyalkanoic acid synthase, PhaR subunit
TIGR02132 (HMM): polyhydroxyalkanoic acid synthase, PhaR subunit
GO:0006112: energy reserve metabolic process
GO:0006112: energy reserve metabolic process
regulatory subunit of PHA synthasereg_subNOTIGR02132 (HMM): polyhydroxyalkanoic acid synthase, PhaR subunit
TIGR02132 (HMM): polyhydroxyalkanoic acid synthase, PhaR subunit
GO:0006112: energy reserve metabolic process
GO:0006112: energy reserve metabolic process
regulatory subunit of PHA synthasereg_subNOTIGR02132 (HMM): polyhydroxyalkanoic acid synthase, PhaR subunit
TIGR02132 (HMM): polyhydroxyalkanoic acid synthase, PhaR subunit
GO:0006112: energy reserve metabolic process
GO:0006112: energy reserve metabolic process
polyhydroxyalkanoate synthesis repressor PhaRrepressYESTIGR01848 (HMM): polyhydroxyalkanoate synthesis repressor PhaR
TIGR01848 (HMM): polyhydroxyalkanoate synthesis repressor PhaR
polyhydroxyalkanoate synthesis repressor PhaRrepressYESTIGR01848 (HMM): polyhydroxyalkanoate synthesis repressor PhaR
TIGR01848 (HMM): polyhydroxyalkanoate synthesis repressor PhaR
polyhydroxyalkanoate synthesis repressor PhaRrepressYESTIGR01848 (HMM): polyhydroxyalkanoate synthesis repressor PhaR
TIGR01848 (HMM): polyhydroxyalkanoate synthesis repressor PhaR
Thiolase, N-terminal domainthiolaseNO
Thiolase, N-terminal domainthiolaseNO
Thiolase, N-terminal domainthiolaseNO

Parent Properties
AccessionName
GenProp0142catabolism
GenProp0157storage polymer systems
GenProp0186storage and structural polymer biosynthesis
GenProp0142catabolism
GenProp0157storage polymer systems
GenProp0186storage and structural polymer biosynthesis
GenProp0142catabolism
GenProp0157storage polymer systems
GenProp0186storage and structural polymer biosynthesis


Sibling Properties
AccessionName
GenProp0141galactose-6-phosphate degradation via tagatose-6-phosphate
GenProp0156cyanophycin-like storage polymers
GenProp0168glycogen system
GenProp0210phenylacetic acid catabolism
GenProp02314-hydroxyphenylacetate degradation
GenProp0233GABA utilization
GenProp02382-aminoethylphosphonate catabolism to acetaldehyde
GenProp0239propionyl-CoA catabolism
GenProp0241phosphonate catabolism
GenProp0271trehalose utilization
GenProp0272pyruvate fermentation to acetoin
GenProp0273protocatechuate degradation to beta-ketoadipate
GenProp0283beta-ketoadipate degradation to succinyl-CoA and acetyl-CoA
GenProp0294ethanolamine degradation proteinaceous organelle
GenProp0457rhamnose catabolism
GenProp0458fucose catabolism
GenProp0461utilization of deoxynucleosides
GenProp0653ectoine catabolism
GenProp0674malonate decarboxylase
GenProp0686allantoin catabolism to glyoxalate and urea
GenProp0687allantoin catabolism to oxamate and carbamoyl-phosphate
GenProp0688urate catabolism to allantoin
GenProp0691glycolysis
GenProp0693fructose utilization as fructose-1,6-bisphosphate
GenProp0694glucose utilization as fructose-1,6-bisphosphate
GenProp0700purine catabolism via urate, xanthine and allantoin
GenProp0702benzoyl-CoA reductase
GenProp07034-hydroxybenzoyl-CoA reductase
GenProp0706cyclohexa-1,5-diene-1-carbonyl-CoA to 3-hydroxypimelyl-CoA, dch/had/oah pathway
GenProp0708catechol meta-cleavage pathway
GenProp0709benzoate catabolism BoxABC pathway
GenProp0711catechol ortho-cleavage upper pathway
GenProp0714galactarate utilization via tartronate semi-aldehyde
GenProp0715galactarate utilization via 2-oxoglutarate semialdehyde
GenProp0716glucarate utilization via tartronate semi-aldehyde
GenProp0717glucarate utilization via 2-oxoglutarate semialdehyde
GenProp0718oxalate degradation
GenProp0734amino acid catabolism
GenProp0749choline sulfate utilization
GenProp0760putrescine degradation to GABA via gamma-glutamylation
GenProp0763nicotinate fermentation to pyruvate and propionate
GenProp0810encapsulin proteinaceous organelle
GenProp0813pyrimidine utilization operon, RutABCDEFGR
GenProp0902quinohemoprotein amine dehydrogenase
GenProp1071myo-inositol catabolism
GenProp1072cyanase system
GenProp1076choline TMA-lyase system
GenProp0840polyphosphate kinase/exopolyphosphatase system
GenProp0158peptidoglycan(murein) biosynthesis
GenProp0183dTDP-L-rhamnose biosynthesis from dTDP-4-dehydro-L-rhamnose
GenProp0297lipopolysaccharide biosynthesis
GenProp0652exopolysaccharide biosynthesis, exosortase A-associated
GenProp0655exopolysaccharide biosynthesis, exosortase B-associated
GenProp0658cellulose biosynthesis
GenProp0793CMP-N-acetylneuraminate biosynthesis from UDP-N-acetylglucosamine
GenProp0822poly(gamma-glutamic acid) biosynthesis
GenProp0906poly-beta-1,6 N-acetyl-D-glucosamine system, IcaADBC type
GenProp0907poly-beta-1,6 N-acetyl-D-glucosamine system, PgaABCD type