Genome Property Definition Page

AccessionGenProp0120
Namepentose phosphate cycle
TypePATHWAY
JCVI RolePentose phosphate pathway
Parent PropertyGenProp0070: energy metabolism
GenProp0072: central intermediary metabolism
Web ReferencesIUBMB: Pentose Phosphate Pathway (early stages)
IUBMB: Pentose Phosphate Pathway (later stages)
Gene Ontology TermGO:0006098: pentose-phosphate shunt (biological_process)

Components
Step NameStep NumRequiredEvidence (Method)Evidence Go Terms
glucose-6-phosphate 1-dehydrogenase1YESTIGR00871 (HMM): glucose-6-phosphate dehydrogenaseGO:0006098: pentose-phosphate shunt
fructose bisphosphatase10NOPF03320 (HMM): bacterial fructose-1,6-bisphosphatase, GlpX-encoded
PF06874 (HMM): firmicute fructose-1,6-bisphosphatase
PF00316 (HMM): fructose-1,6-bisphosphatase
TIGR00330 (HMM): fructose-1,6-bisphosphatase, class II
PF01950 (HMM): fructose-1,6-bisphosphatase
GO:0006098: pentose-phosphate shunt
GO:0006098: pentose-phosphate shunt
GO:0006098: pentose-phosphate shunt
GO:0006098: pentose-phosphate shunt
GO:0006098: pentose-phosphate shunt
glucose-6-phosphate isomerase11YESPF00342 (HMM): glucose-6-phosphate isomerase
PF06560 (HMM): glucose-6-phosphate isomerase
TIGR02128 (HMM): bifunctional phosphoglucose/phosphomannose isomerase
GO:0006098: pentose-phosphate shunt
GO:0006098: pentose-phosphate shunt
GO:0006098: pentose-phosphate shunt
6-phosphogluconolactonase2NOTIGR01198 (HMM): 6-phosphogluconolactonaseGO:0006098: pentose-phosphate shunt
6-phosphogluconate dehydrogenase, decarboxylating3YESTIGR00873 (HMM): 6-phosphogluconate dehydrogenase (decarboxylating)
TIGR00872 (HMM): 6-phosphogluconate dehydrogenase (decarboxylating)
GO:0006098: pentose-phosphate shunt
GO:0006098: pentose-phosphate shunt
ribose 5-phosphate isomerase4AYESPF06026 (HMM): ribose 5-phosphate isomerase A
TIGR01120 (HMM): ribose 5-phosphate isomerase B
TIGR02133 (HMM): ribose 5-phosphate isomerase
GO:0006098: pentose-phosphate shunt
GO:0006098: pentose-phosphate shunt
GO:0006098: pentose-phosphate shunt
ribulose-phosphate 3-epimerase4BYESTIGR01163 (HMM): ribulose-phosphate 3-epimeraseGO:0006098: pentose-phosphate shunt
transketolase5/7YESTIGR00232 (HMM): transketolaseGO:0006098: pentose-phosphate shunt
transaldolase6YESTIGR00874 (HMM): transaldolase
TIGR00876 (HMM): transaldolase
TIGR02134 (HMM): transaldolase
GO:0006098: pentose-phosphate shunt
GO:0006098: pentose-phosphate shunt
GO:0006098: pentose-phosphate shunt
triosephosphate isomerase8YESTIGR00419 (HMM): triose-phosphate isomeraseGO:0006098: pentose-phosphate shunt
fructose-bisphosphate aldolase9YESTIGR01859 (HMM): fructose-1,6-bisphosphate aldolase, class II
PF00274 (HMM): fructose-bisphosphate aldolase class-I
TIGR01520 (HMM): fructose-bisphosphate aldolase, class II
TIGR01521 (HMM): fructose-bisphosphate aldolase, class II, Calvin cycle subtype
GO:0006098: pentose-phosphate shunt
GO:0006098: pentose-phosphate shunt
GO:0006098: pentose-phosphate shunt
GO:0006098: pentose-phosphate shunt

Parent Properties
AccessionName
GenProp0070energy metabolism
GenProp0072central intermediary metabolism


Sibling Properties
AccessionName
GenProp0011methanogenesis
GenProp0023glyoxylate shunt
GenProp0027photosynthesis
GenProp0033TCA cycle
GenProp0131electron transport
GenProp0243ATP synthases
GenProp0298fermentation
GenProp0459D-xylose utilization (conversion to D-xylulose-5-phosphate)
GenProp0468Entner-Doudoroff pathway
GenProp0473arsenite oxidase
GenProp0611aerobic respiration
GenProp0636respiratory nitrate reductase
GenProp0637anaerobic dimethyl sulfoxide reductase
GenProp0638trimethylamine N-oxide reductase system
GenProp0682formate-dependent nitrite reductase, seven-gene type
GenProp0683cytochrome c nitrite reductase NrfHA
GenProp0691glycolysis
GenProp0695cytochrome b558/566
GenProp0723hydrogenase, nickel and F420-dependent
GenProp0737anaerobic glycerol-3-phosphate dehydrogenase complex
GenProp0755pyruvate conversion to propionate, anaerobic, FAD/NAD-regenerating
GenProp0756fumarate reductase complex
GenProp0764DMSO reductase family type II enzyme
GenProp08412-oxoacid:ferredoxin oxidoreductase
GenProp0856bacterio-opsin system
GenProp0914hydrogenase, [FeFe]-dependent
GenProp0915hydrogenase, mono-iron type
GenProp1089B12-dependent trimeric diol/glycerol dehydratase
GenProp0031methane utilization
GenProp0035Calvin cycle
GenProp0118ornithine biosynthesis from glutamate, acetylated branch
GenProp0143Leloir pathway (galactose/glucose interconversion)
GenProp0196sulfur metabolism
GenProp0202nitrogen metabolism
GenProp0242phosphorus metabolism
GenProp0478acetyl-CoA -- acetate interconversion via acetyl phosphate
GenProp0479acetate -- acetyl-CoA interconversions
GenProp0689glyoxalate conversion to phosphoglycerate
GenProp0865carbon fixation