Genome Property Definition Page

AccessionGenProp0175
Nameribosome, bacterial, small subunit
TypeSYSTEM
DescriptionRibosome, bacterial, small subunit. This property allows HMMs specific for ribosomal proteins to be tested in phylogenetic profiles
JCVI RoleRibosomal proteins: synthesis and modification
Parent PropertyGenProp0197: protein biosynthesis
GenProp0197: protein biosynthesis
GenProp0197: protein biosynthesis
Literature References
[ 1 ]Ban N, Beckmann R, Cate JH, Dinman JD, Dragon F, Ellis SR, Lafontaine DL, Lindahl L, Liljas A, Lipton JM, McAlear MA, Moore PB, Noller HF, Ortega J, Panse VG, Ramakrishnan V, Spahn CM, Steitz TA, Tchorzewski M, Tollervey D, Warren AJ, Williamson JR, Wilso  A new system for naming ribosomal proteins.  Curr Opin Struct Biol. 2014 Feb;24:165-9. doi: 10.1016/j.sbi.2014.01.002.  PMID 24524803
[ 1 ]Ban N, Beckmann R, Cate JH, Dinman JD, Dragon F, Ellis SR, Lafontaine DL, Lindahl L, Liljas A, Lipton JM, McAlear MA, Moore PB, Noller HF, Ortega J, Panse VG, Ramakrishnan V, Spahn CM, Steitz TA, Tchorzewski M, Tollervey D, Warren AJ, Williamson JR, Wilso  A new system for naming ribosomal proteins.  Curr Opin Struct Biol. 2014 Feb;24:165-9. doi: 10.1016/j.sbi.2014.01.002.  PMID 24524803
[ 1 ]Ban N, Beckmann R, Cate JH, Dinman JD, Dragon F, Ellis SR, Lafontaine DL, Lindahl L, Liljas A, Lipton JM, McAlear MA, Moore PB, Noller HF, Ortega J, Panse VG, Ramakrishnan V, Spahn CM, Steitz TA, Tchorzewski M, Tollervey D, Warren AJ, Williamson JR, Wilso  A new system for naming ribosomal proteins.  Curr Opin Struct Biol. 2014 Feb;24:165-9. doi: 10.1016/j.sbi.2014.01.002.  PMID 24524803

Components
Step NameStep NumRequiredEvidence (Method)Evidence Go Terms
S1bS1NOTIGR00717 (HMM): ribosomal protein bS1
TIGR00717 (HMM): ribosomal protein bS1
TIGR00717 (HMM): ribosomal protein bS1
S1bS1NOTIGR00717 (HMM): ribosomal protein bS1
TIGR00717 (HMM): ribosomal protein bS1
TIGR00717 (HMM): ribosomal protein bS1
S1bS1NOTIGR00717 (HMM): ribosomal protein bS1
TIGR00717 (HMM): ribosomal protein bS1
TIGR00717 (HMM): ribosomal protein bS1
S16bS16YESTIGR00002 (HMM): ribosomal protein bS16
TIGR00002 (HMM): ribosomal protein bS16
TIGR00002 (HMM): ribosomal protein bS16
S16bS16YESTIGR00002 (HMM): ribosomal protein bS16
TIGR00002 (HMM): ribosomal protein bS16
TIGR00002 (HMM): ribosomal protein bS16
S16bS16YESTIGR00002 (HMM): ribosomal protein bS16
TIGR00002 (HMM): ribosomal protein bS16
TIGR00002 (HMM): ribosomal protein bS16
S18bS18YESTIGR00165 (HMM): ribosomal protein bS18
TIGR00165 (HMM): ribosomal protein bS18
TIGR00165 (HMM): ribosomal protein bS18
S18bS18YESTIGR00165 (HMM): ribosomal protein bS18
TIGR00165 (HMM): ribosomal protein bS18
TIGR00165 (HMM): ribosomal protein bS18
S18bS18YESTIGR00165 (HMM): ribosomal protein bS18
TIGR00165 (HMM): ribosomal protein bS18
TIGR00165 (HMM): ribosomal protein bS18
S20bS20YESTIGR00029 (HMM): ribosomal protein bS20
TIGR00029 (HMM): ribosomal protein bS20
TIGR00029 (HMM): ribosomal protein bS20
S20bS20YESTIGR00029 (HMM): ribosomal protein bS20
TIGR00029 (HMM): ribosomal protein bS20
TIGR00029 (HMM): ribosomal protein bS20
S20bS20YESTIGR00029 (HMM): ribosomal protein bS20
TIGR00029 (HMM): ribosomal protein bS20
TIGR00029 (HMM): ribosomal protein bS20
S21bS21NOTIGR00030 (HMM): ribosomal protein bS21
TIGR00030 (HMM): ribosomal protein bS21
TIGR00030 (HMM): ribosomal protein bS21
S21bS21NOTIGR00030 (HMM): ribosomal protein bS21
TIGR00030 (HMM): ribosomal protein bS21
TIGR00030 (HMM): ribosomal protein bS21
S21bS21NOTIGR00030 (HMM): ribosomal protein bS21
TIGR00030 (HMM): ribosomal protein bS21
TIGR00030 (HMM): ribosomal protein bS21
S6bS6YESTIGR00166 (HMM): ribosomal protein bS6
TIGR00166 (HMM): ribosomal protein bS6
TIGR00166 (HMM): ribosomal protein bS6
S6bS6YESTIGR00166 (HMM): ribosomal protein bS6
TIGR00166 (HMM): ribosomal protein bS6
TIGR00166 (HMM): ribosomal protein bS6
S6bS6YESTIGR00166 (HMM): ribosomal protein bS6
TIGR00166 (HMM): ribosomal protein bS6
TIGR00166 (HMM): ribosomal protein bS6
THXbTHXNOTIGR04560 (HMM): ribosomal small subunit protein bTHX
TIGR04560 (HMM): ribosomal small subunit protein bTHX
TIGR04560 (HMM): ribosomal small subunit protein bTHX
THXbTHXNOTIGR04560 (HMM): ribosomal small subunit protein bTHX
TIGR04560 (HMM): ribosomal small subunit protein bTHX
TIGR04560 (HMM): ribosomal small subunit protein bTHX
THXbTHXNOTIGR04560 (HMM): ribosomal small subunit protein bTHX
TIGR04560 (HMM): ribosomal small subunit protein bTHX
TIGR04560 (HMM): ribosomal small subunit protein bTHX
S10uS10YESTIGR01049 (HMM): ribosomal protein uS10
TIGR01049 (HMM): ribosomal protein uS10
TIGR01049 (HMM): ribosomal protein uS10
S10uS10YESTIGR01049 (HMM): ribosomal protein uS10
TIGR01049 (HMM): ribosomal protein uS10
TIGR01049 (HMM): ribosomal protein uS10
S10uS10YESTIGR01049 (HMM): ribosomal protein uS10
TIGR01049 (HMM): ribosomal protein uS10
TIGR01049 (HMM): ribosomal protein uS10
S11uS11YESPF00411 (HMM): ribosomal protein uS11
PF00411 (HMM): ribosomal protein uS11
PF00411 (HMM): ribosomal protein uS11
S11uS11YESPF00411 (HMM): ribosomal protein uS11
PF00411 (HMM): ribosomal protein uS11
PF00411 (HMM): ribosomal protein uS11
S11uS11YESPF00411 (HMM): ribosomal protein uS11
PF00411 (HMM): ribosomal protein uS11
PF00411 (HMM): ribosomal protein uS11
S12uS12YESTIGR00981 (HMM): ribosomal protein uS12
TIGR00981 (HMM): ribosomal protein uS12
TIGR00981 (HMM): ribosomal protein uS12
S12uS12YESTIGR00981 (HMM): ribosomal protein uS12
TIGR00981 (HMM): ribosomal protein uS12
TIGR00981 (HMM): ribosomal protein uS12
S12uS12YESTIGR00981 (HMM): ribosomal protein uS12
TIGR00981 (HMM): ribosomal protein uS12
TIGR00981 (HMM): ribosomal protein uS12
S13uS13YESPF00416 (HMM): ribosomal protein uS13
PF00416 (HMM): ribosomal protein uS13
PF00416 (HMM): ribosomal protein uS13
S13uS13YESPF00416 (HMM): ribosomal protein uS13
PF00416 (HMM): ribosomal protein uS13
PF00416 (HMM): ribosomal protein uS13
S13uS13YESPF00416 (HMM): ribosomal protein uS13
PF00416 (HMM): ribosomal protein uS13
PF00416 (HMM): ribosomal protein uS13
S14uS14YESPF00253 (HMM): ribosomal protein uS14
PF00253 (HMM): ribosomal protein uS14
PF00253 (HMM): ribosomal protein uS14
S14uS14YESPF00253 (HMM): ribosomal protein uS14
PF00253 (HMM): ribosomal protein uS14
PF00253 (HMM): ribosomal protein uS14
S14uS14YESPF00253 (HMM): ribosomal protein uS14
PF00253 (HMM): ribosomal protein uS14
PF00253 (HMM): ribosomal protein uS14
S15uS15YESTIGR00952 (HMM): ribosomal protein uS15
TIGR00952 (HMM): ribosomal protein uS15
TIGR00952 (HMM): ribosomal protein uS15
S15uS15YESTIGR00952 (HMM): ribosomal protein uS15
TIGR00952 (HMM): ribosomal protein uS15
TIGR00952 (HMM): ribosomal protein uS15
S15uS15YESTIGR00952 (HMM): ribosomal protein uS15
TIGR00952 (HMM): ribosomal protein uS15
TIGR00952 (HMM): ribosomal protein uS15
S17uS17YESPF00366 (HMM): ribosomal protein uS17
PF00366 (HMM): ribosomal protein uS17
PF00366 (HMM): ribosomal protein uS17
S17uS17YESPF00366 (HMM): ribosomal protein uS17
PF00366 (HMM): ribosomal protein uS17
PF00366 (HMM): ribosomal protein uS17
S17uS17YESPF00366 (HMM): ribosomal protein uS17
PF00366 (HMM): ribosomal protein uS17
PF00366 (HMM): ribosomal protein uS17
S19uS19YESTIGR01050 (HMM): ribosomal protein uS19
TIGR01050 (HMM): ribosomal protein uS19
TIGR01050 (HMM): ribosomal protein uS19
S19uS19YESTIGR01050 (HMM): ribosomal protein uS19
TIGR01050 (HMM): ribosomal protein uS19
TIGR01050 (HMM): ribosomal protein uS19
S19uS19YESTIGR01050 (HMM): ribosomal protein uS19
TIGR01050 (HMM): ribosomal protein uS19
TIGR01050 (HMM): ribosomal protein uS19
S2uS2YESTIGR01011 (HMM): ribosomal protein uS2
TIGR01011 (HMM): ribosomal protein uS2
TIGR01011 (HMM): ribosomal protein uS2
S2uS2YESTIGR01011 (HMM): ribosomal protein uS2
TIGR01011 (HMM): ribosomal protein uS2
TIGR01011 (HMM): ribosomal protein uS2
S2uS2YESTIGR01011 (HMM): ribosomal protein uS2
TIGR01011 (HMM): ribosomal protein uS2
TIGR01011 (HMM): ribosomal protein uS2
S3uS3YESTIGR01009 (HMM): ribosomal protein uS3
TIGR01009 (HMM): ribosomal protein uS3
TIGR01009 (HMM): ribosomal protein uS3
S3uS3YESTIGR01009 (HMM): ribosomal protein uS3
TIGR01009 (HMM): ribosomal protein uS3
TIGR01009 (HMM): ribosomal protein uS3
S3uS3YESTIGR01009 (HMM): ribosomal protein uS3
TIGR01009 (HMM): ribosomal protein uS3
TIGR01009 (HMM): ribosomal protein uS3
S4uS4YESTIGR01017 (HMM): ribosomal protein uS4
TIGR01017 (HMM): ribosomal protein uS4
TIGR01017 (HMM): ribosomal protein uS4
S4uS4YESTIGR01017 (HMM): ribosomal protein uS4
TIGR01017 (HMM): ribosomal protein uS4
TIGR01017 (HMM): ribosomal protein uS4
S4uS4YESTIGR01017 (HMM): ribosomal protein uS4
TIGR01017 (HMM): ribosomal protein uS4
TIGR01017 (HMM): ribosomal protein uS4
S5uS5YESTIGR01021 (HMM): ribosomal protein uS5
TIGR01021 (HMM): ribosomal protein uS5
TIGR01021 (HMM): ribosomal protein uS5
S5uS5YESTIGR01021 (HMM): ribosomal protein uS5
TIGR01021 (HMM): ribosomal protein uS5
TIGR01021 (HMM): ribosomal protein uS5
S5uS5YESTIGR01021 (HMM): ribosomal protein uS5
TIGR01021 (HMM): ribosomal protein uS5
TIGR01021 (HMM): ribosomal protein uS5
S7uS7YESTIGR01029 (HMM): ribosomal protein uS7
TIGR01029 (HMM): ribosomal protein uS7
TIGR01029 (HMM): ribosomal protein uS7
S7uS7YESTIGR01029 (HMM): ribosomal protein uS7
TIGR01029 (HMM): ribosomal protein uS7
TIGR01029 (HMM): ribosomal protein uS7
S7uS7YESTIGR01029 (HMM): ribosomal protein uS7
TIGR01029 (HMM): ribosomal protein uS7
TIGR01029 (HMM): ribosomal protein uS7
S8uS8YESPF00410 (HMM): ribosomal protein uS8
PF00410 (HMM): ribosomal protein uS8
PF00410 (HMM): ribosomal protein uS8
S8uS8YESPF00410 (HMM): ribosomal protein uS8
PF00410 (HMM): ribosomal protein uS8
PF00410 (HMM): ribosomal protein uS8
S8uS8YESPF00410 (HMM): ribosomal protein uS8
PF00410 (HMM): ribosomal protein uS8
PF00410 (HMM): ribosomal protein uS8
S9uS9YESPF00380 (HMM): ribosomal protein uS9
PF00380 (HMM): ribosomal protein uS9
PF00380 (HMM): ribosomal protein uS9
S9uS9YESPF00380 (HMM): ribosomal protein uS9
PF00380 (HMM): ribosomal protein uS9
PF00380 (HMM): ribosomal protein uS9
S9uS9YESPF00380 (HMM): ribosomal protein uS9
PF00380 (HMM): ribosomal protein uS9
PF00380 (HMM): ribosomal protein uS9

Parent Properties
AccessionName
GenProp0197protein biosynthesis
GenProp0197protein biosynthesis
GenProp0197protein biosynthesis


Sibling Properties
AccessionName
GenProp0016selenocysteine system
GenProp0312pyrrolysine
GenProp0132transcription termination - antitermination Nus factors
GenProp0148release factor 2 programmed frameshift
GenProp0174ribosome, bacterial, large subunit
GenProp0188GatABC aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase complex
GenProp0189tRNA-Gln direct aminoacylation
GenProp0211tmRNA trans-translation system
GenProp0258tRNA aminoacylation
GenProp0259tRNA-Asn direct aminoacylation
GenProp0304cysteine biosynthesis, tRNA-dependent
GenProp0634Sigma-54 (RpoN) systems
GenProp0692selenouridine-containing tRNA
GenProp0704tRNA U34 carboxymethylaminomethyl modification
GenProp0740translation initiation, bacterial
GenProp0741translation elongation, bacterial
GenProp0746translation termination, bacterial
GenProp0812rho-dependent termination