Genome Property Definition Page

AccessionGenProp0219
Namespermidine biosynthesis from arginine (via agmatine)
TypeMETAPATH
DescriptionThis pathway uses arginine decarboxylase followed by agmatinase (agmatine ureohydrolase) instead of arginase (arginine ureohydrolase) followed by ornithine decarboxylase to get to putrescine, the immediate precursor of sperimidine. One of several possible arginine degradation pathways (see role_id 109) continues 3) putrescine transaminase 4) pyrroline dehydrogenase 5) glutamate-succinic semialdehyde transaminase 6) succinic semialdehyde dehydrogenase.
JCVI RolePolyamine biosynthesis
Parent PropertyGenProp0063: biosynthesis
GenProp0063: biosynthesis
GenProp0063: biosynthesis

Components
Step NameStep NumRequiredEvidence (Method)Evidence Go Terms
putrescine biosynthesis from arginine (GenProp0642)1YESGenProp0642 (GENPROP): putrescine biosynthesis from arginine utilizing agmatinase
putrescine biosynthesis from arginine (GenProp0642)1YESGenProp0642 (GENPROP): putrescine biosynthesis from arginine utilizing agmatinase
putrescine biosynthesis from arginine (GenProp0642)1YESGenProp0642 (GENPROP): putrescine biosynthesis from arginine utilizing agmatinase
spermidine biosynthesis from putrescine (GenProp0641)2YESGenProp0641 (GENPROP): spermidine biosynthesis from putrescine and S-adenosylmethionine
spermidine biosynthesis from putrescine (GenProp0641)2YESGenProp0641 (GENPROP): spermidine biosynthesis from putrescine and S-adenosylmethionine
spermidine biosynthesis from putrescine (GenProp0641)2YESGenProp0641 (GENPROP): spermidine biosynthesis from putrescine and S-adenosylmethionine

Parent Properties
AccessionName
GenProp0063biosynthesis
GenProp0063biosynthesis
GenProp0063biosynthesis


Sibling Properties
AccessionName
GenProp0077natural products biosynthesis
GenProp0126amino acid biosynthesis
GenProp0184cofactor biosynthesis
GenProp0185nucleotide biosynthesis
GenProp0186storage and structural polymer biosynthesis
GenProp0197protein biosynthesis
GenProp0267osmolyte biosynthesis
GenProp0641spermidine biosynthesis from putrescine and S-adenosylmethionine
GenProp0642putrescine biosynthesis from arginine utilizing agmatinase
GenProp0643putrescine biosynthesis from arginine via ornithine
GenProp0644putrescine biosynthesis from glutamate via ornithine
GenProp0645putrescine biosynthesis
GenProp0724phosphonoacetaldehyde biosynthesis from phosphoenolpyruvate
GenProp0738agmatine to putrescine via N-carbamoylputrescine
GenProp0795carbohydrate biosynthesis
GenProp0838lipid biosynthesis
GenProp0909capreomycidine biosynthesis
GenProp0942alkane biosynthesis, cyanobacterial
GenProp1053rSAM/selenodomain system
GenProp1056rhizo-twelve system
GenProp1057radical SAM/SPASM system GeoRSP