Genome Property Definition Page
Accession | GenProp0458 | |
Name | fucose catabolism | |
Type | SYSTEM | |
Description | L-fucose to fuculose by 5.3.1.25 L-fucose ketol-isomerase then to L-fuculose 1P by 2.7.1.51 L-fuculokinase then to L-lactaldehyde and glycerone phosphate by 4.1.2.17 L-fuculose-phosphate aldolase Plus transporter to import fucose Plus transcription factors | |
JCVI Role | Sugars | |
Parent Property | GenProp0142: catabolism | |
Literature References |
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Gene Ontology Term | GO:0015756: fucose transport (biological_process) GO:0019317: fucose catabolic process (biological_process) GO:0019317: fucose catabolic process (biological_process) GO:0019317: fucose catabolic process (biological_process) GO:0043468: regulation of fucose catabolic process (biological_process) |
Components
Step Name | Step Num | Required | Evidence (Method) | Evidence Go Terms |
---|---|---|---|---|
lactaldehyde oxidoreductases | ADH | NO | TIGR02638 (NOCLUST): lactaldehyde reductase PF00465 (HMM-CLUST): alcohol dehydrogenase, iron-containing | GO:0019317: fucose catabolic process GO:0019317: fucose catabolic process |
L-fuculose-phosphate aldolase | ald_ase | YES | TIGR01086 (HMM): L-fuculose phosphate aldolase PF00596 (HMM-CLUST): class II aldolase/adducin N-terminal domain | GO:0019317: fucose catabolic process GO:0019317: fucose catabolic process |
L-fucose isomerase | fuc_iso | YES | TIGR01089 (HMM): L-fucose isomerase | GO:0019317: fucose catabolic process |
L-fuculokinase | fuc_kin | YES | TIGR02628 (HMM): L-fuculokinase PF00370 (HMM-CLUST): FGGY family of carbohydrate kinases, N-terminal domain | GO:0019317: fucose catabolic process GO:0019317: fucose catabolic process |
clustered regulatory genes | regulat | NO | PF00455 (HMM-CLUST): DeoR C-terminal sensor domain PF00165 (HMM-CLUST): transcriptional regulator, AraC family PF00392 (HMM-CLUST): bacterial regulatory protein, GntR family | GO:0019317: fucose catabolic process GO:0043468: regulation of fucose catabolic process GO:0019317: fucose catabolic process GO:0043468: regulation of fucose catabolic process GO:0019317: fucose catabolic process GO:0043468: regulation of fucose catabolic process |
fucose transport components | transpo | YES | TIGR00885 (HMM): L-fucose:H+ symporter permease PF05025 (HMM-CLUST): RbsD/FucU transport protein family | GO:0019317: fucose catabolic process GO:0015756: fucose transport GO:0019317: fucose catabolic process GO:0015756: fucose transport |
Parent Properties
Accession | Name |
---|---|
GenProp0142 | catabolism |
Sibling Properties
Accession | Name |
---|---|
GenProp0055 | polyhydroxyalkanoic acids |
GenProp0141 | galactose-6-phosphate degradation via tagatose-6-phosphate |
GenProp0156 | cyanophycin-like storage polymers |
GenProp0168 | glycogen system |
GenProp0210 | phenylacetic acid catabolism |
GenProp0231 | 4-hydroxyphenylacetate degradation |
GenProp0233 | GABA utilization |
GenProp0238 | 2-aminoethylphosphonate catabolism to acetaldehyde |
GenProp0239 | propionyl-CoA catabolism |
GenProp0241 | phosphonate catabolism |
GenProp0271 | trehalose utilization |
GenProp0272 | pyruvate fermentation to acetoin |
GenProp0273 | protocatechuate degradation to beta-ketoadipate |
GenProp0283 | beta-ketoadipate degradation to succinyl-CoA and acetyl-CoA |
GenProp0294 | ethanolamine degradation proteinaceous organelle |
GenProp0457 | rhamnose catabolism |
GenProp0461 | utilization of deoxynucleosides |
GenProp0653 | ectoine catabolism |
GenProp0674 | malonate decarboxylase |
GenProp0686 | allantoin catabolism to glyoxalate and urea |
GenProp0687 | allantoin catabolism to oxamate and carbamoyl-phosphate |
GenProp0688 | urate catabolism to allantoin |
GenProp0691 | glycolysis |
GenProp0693 | fructose utilization as fructose-1,6-bisphosphate |
GenProp0694 | glucose utilization as fructose-1,6-bisphosphate |
GenProp0700 | purine catabolism via urate, xanthine and allantoin |
GenProp0702 | benzoyl-CoA reductase |
GenProp0703 | 4-hydroxybenzoyl-CoA reductase |
GenProp0706 | cyclohexa-1,5-diene-1-carbonyl-CoA to 3-hydroxypimelyl-CoA, dch/had/oah pathway |
GenProp0708 | catechol meta-cleavage pathway |
GenProp0709 | benzoate catabolism BoxABC pathway |
GenProp0711 | catechol ortho-cleavage upper pathway |
GenProp0714 | galactarate utilization via tartronate semi-aldehyde |
GenProp0715 | galactarate utilization via 2-oxoglutarate semialdehyde |
GenProp0716 | glucarate utilization via tartronate semi-aldehyde |
GenProp0717 | glucarate utilization via 2-oxoglutarate semialdehyde |
GenProp0718 | oxalate degradation |
GenProp0734 | amino acid catabolism |
GenProp0749 | choline sulfate utilization |
GenProp0760 | putrescine degradation to GABA via gamma-glutamylation |
GenProp0763 | nicotinate fermentation to pyruvate and propionate |
GenProp0810 | encapsulin proteinaceous organelle |
GenProp0813 | pyrimidine utilization operon, RutABCDEFGR |
GenProp0902 | quinohemoprotein amine dehydrogenase |
GenProp1071 | myo-inositol catabolism |
GenProp1072 | cyanase system |
GenProp1076 | choline TMA-lyase system |