Genome Property Definition Page

AccessionGenProp0459
NameD-xylose utilization (conversion to D-xylulose-5-phosphate)
TypeSYSTEM
DescriptionROUGH-in for a xylose catabolism genome property, where having xylose isomerase, xylulose kinase, importers, and maybe an aldolase would signify xylose catabolism.
JCVI RoleSugars
Parent PropertyGenProp0070: energy metabolism
Gene Ontology TermGO:0015753: D-xylose transport (biological_process)
GO:0042732: D-xylose metabolic process (biological_process)

Components
Step NameStep NumRequiredEvidence (Method)Evidence Go Terms
xylose 1-epimeraseepimNOPF01263 (HMM-CLUST): aldose 1-epimeraseGO:0042732: D-xylose metabolic process
hypothethesized transporter componentshyp_tranNOPF05360 (HMM-CLUST): yiaA/B two helix domain
clustered regulatory componentsregulatNOPF00356 (HMM-CLUST): transcriptional regulator, LacI family
PF00480 (HMM-CLUST): ROK family protein
PF00455 (HMM-CLUST): DeoR C-terminal sensor domain
PF00165 (HMM-CLUST): transcriptional regulator, AraC family
xylose transporter componentstransporYESTIGR02634 (HMM): D-xylose ABC transporter, D-xylose-binding protein
TIGR02633 (HMM): D-xylose ABC transporter, ATP-binding protein
TIGR00879 (HMM-CLUST): MFS transporter, sugar porter (SP) family
PF02653 (HMM-CLUST): branched-chain amino acid ABC transporter, permease protein
PF00005 (HMM-CLUST): ABC transporter, ATP-binding protein
GO:0015753: D-xylose transport
GO:0015753: D-xylose transport
GO:0015753: D-xylose transport
GO:0015753: D-xylose transport
GO:0015753: D-xylose transport
xylose isomerasexyl_isoYESTIGR02630 (HMM): xylose isomerase
TIGR02631 (HMM): xylose isomerase
GO:0042732: D-xylose metabolic process
GO:0042732: D-xylose metabolic process
xylulokinasexyl_kinYESTIGR01312 (HMM): xylulokinaseGO:0042732: D-xylose metabolic process

Parent Properties
AccessionName
GenProp0070energy metabolism


Sibling Properties
AccessionName
GenProp0011methanogenesis
GenProp0023glyoxylate shunt
GenProp0027photosynthesis
GenProp0033TCA cycle
GenProp0120pentose phosphate cycle
GenProp0131electron transport
GenProp0243ATP synthases
GenProp0298fermentation
GenProp0468Entner-Doudoroff pathway
GenProp0473arsenite oxidase
GenProp0611aerobic respiration
GenProp0636respiratory nitrate reductase
GenProp0637anaerobic dimethyl sulfoxide reductase
GenProp0638trimethylamine N-oxide reductase system
GenProp0682formate-dependent nitrite reductase, seven-gene type
GenProp0683cytochrome c nitrite reductase NrfHA
GenProp0691glycolysis
GenProp0695cytochrome b558/566
GenProp0723hydrogenase, nickel and F420-dependent
GenProp0737anaerobic glycerol-3-phosphate dehydrogenase complex
GenProp0755pyruvate conversion to propionate, anaerobic, FAD/NAD-regenerating
GenProp0756fumarate reductase complex
GenProp0764DMSO reductase family type II enzyme
GenProp08412-oxoacid:ferredoxin oxidoreductase
GenProp0856bacterio-opsin system
GenProp0914hydrogenase, [FeFe]-dependent
GenProp0915hydrogenase, mono-iron type
GenProp1089B12-dependent trimeric diol/glycerol dehydratase