Genome Property Definition Page

AccessionGenProp0470
Namesporadically distributed four-gene operon
TypeSYSTEM
DescriptionA conserved gene four-gene neighborhood is found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), and Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). It is found near CRISPR repeats in Geobacillus kaustophilus HTA426, whose genome has no identified Cas proteins. It is found near a cas gene cluster and its CRISPR repeats in another species.
JCVI RoleConserved
Parent PropertyGenProp0475: Unknown biological process
GenProp0475: Unknown biological process

Components
Step NameStep NumRequiredEvidence (Method)Evidence Go Terms
sporadic operon protein A - TIGR02677AYESTIGR02677 (HMM): TIGR02677 family protein
sporadic operon protein A - TIGR02677AYESTIGR02677 (HMM): TIGR02677 family protein
sporadic operon protein B - TIGR02678BYESTIGR02678 (HMM): TIGR02678 family protein
sporadic operon protein B - TIGR02678BYESTIGR02678 (HMM): TIGR02678 family protein
sporadic operon protein C - TIGR02680CYESTIGR02680 (HMM): TIGR02680 family protein
sporadic operon protein C - TIGR02680CYESTIGR02680 (HMM): TIGR02680 family protein
sporadic operon protein D - TIGR02679DYESTIGR02679 (HMM): TIGR02679 family protein
sporadic operon protein D - TIGR02679DYESTIGR02679 (HMM): TIGR02679 family protein

Parent Properties
AccessionName
GenProp0475Unknown biological process
GenProp0475Unknown biological process


Sibling Properties
AccessionName
GenProp0471uncharacterized gene pair TIGR02683/TIGR02684
GenProp0472uncharacterized gene pair TIGR02687/TIGR02688
GenProp0627gene pair involved in iron and oxygen metabolism
GenProp0665peptide chain release operon, RctB-like/PrfH
GenProp0751Acidobacterial ADOP/PadR gene pairs
GenProp0790sporadic pair TIGR03545/TIGR03546
GenProp0798Enterococcus/Aeromonas extended locus
GenProp0830integral membrane mystery pair
GenProp0854ParB-rel/ThiF-rel cassette PRTRC
GenProp0868uncharacterized protein pair with twin-arg and repeat
GenProp0894Actinobacterial uncharacterized trio
GenProp0916radical SAM/uncharacterized protein TIGR03936 system
GenProp0940metallo-mystery pair
GenProp0959radical SAM/uncharacterized protein TIGR04002 system
GenProp0965YedE/YedF selenium handling system
GenProp1063Memo/AMMECR1/rSAM family trio system
GenProp1066uncharacterized cassette GAK (Grasp, Amphipathic, Kinase)
GenProp1086Firmicutes/Treponema mobile radical SAM system