Genome Property Definition Page
| Accession | GenProp0485 |
| Name | F and P-type conjugation systems (type IV secretion), common components |
| Type | SYSTEM |
| Description | Both the F-type (F factor like) and P-type (Ti plasmid like) conjucation systems use a core set of structures for the elaboration of a conjugative pilus. Components specific to these two systems are found in related Genome Properties. |
| JCVI Role | Plasmid functions |
| Parent Property | GenProp0489: F-type conjugation system |
| Gene Ontology Term | GO:0009291: unidirectional conjugation (biological_process) |
Components
| Step Name | Step Num | Required | Evidence (Method) | Evidence Go Terms |
|---|---|---|---|---|
| checked, decided not to include | IGNORE | NO | narrow species range (MANUAL) | |
| pilin, TraA/TrbC/VirB2 | TraA | YES | PF05513 (HMM): TraA TIGR02758 (HMM): type IV conjugative transfer system pilin TraA PF04956 (HMM): conjugal transfer protein TrbC | GO:0009291: unidirectional conjugation GO:0009291: unidirectional conjugation GO:0009291: unidirectional conjugation |
| T4SS protein TraB/TrbI/VirB10 | TraB | YES | PF06447 (HMM): PF03743 (HMM): bacterial conjugation TrbI-like protein | GO:0009291: unidirectional conjugation GO:0009291: unidirectional conjugation |
| ATPase, TraC/TrbE/VirB4 | TraC | YES | TIGR02746 (HMM): type-IV secretion system protein TraC TIGR00929 (HMM): type IV secretion/conjugal transfer ATPase, VirB4 family PF03135 (HMM): CagE, TrbE, VirB family, component of type IV transporter system | GO:0009291: unidirectional conjugation GO:0009291: unidirectional conjugation GO:0009291: unidirectional conjugation |
| coupling factor, DNA-pumping ATPase TraD | TraD | YES | TIGR02759 (HMM): type IV conjugative transfer system coupling protein TraD | GO:0009291: unidirectional conjugation |
| T4SS protein TraE/TrbJ/VirB5 | TraE | YES | PF05309 (HMM): TraE protein TIGR02761 (HMM): type IV conjugative transfer system protein TraE TIGR02780 (HMM): P-type conjugative transfer protein TrbJ TIGR02791 (HMM): P-type DNA transfer protein VirB5 | GO:0009291: unidirectional conjugation GO:0009291: unidirectional conjugation GO:0009291: unidirectional conjugation GO:0009291: unidirectional conjugation |
| mate-pair stab. TraG/TrbL/VirB6 | TraG | YES | PF07916 (HMM): TraG-like protein, N-terminal domain PF04610 (HMM): TrbL/VirB6 plasmid conjugal transfer protein TIGR02783 (HMM): P-type conjugative transfer protein TrbL | GO:0009291: unidirectional conjugation GO:0009291: unidirectional conjugation GO:0009291: unidirectional conjugation |
| T4SS protein TraK/TrbG/VirB9 | TraK | YES | PF06586 (HMM): TraK protein TIGR02756 (HMM): type-F conjugative transfer system secretin TraK TIGR02775 (HMM): P-type conjugative transfer protein TrbG TIGR02781 (HMM): P-type conjugative transfer protein VirB9 | GO:0009291: unidirectional conjugation GO:0009291: unidirectional conjugation GO:0009291: unidirectional conjugation GO:0009291: unidirectional conjugation |
| T4SS protein TraL/TrbD/VirB3 | TraL | YES | PF07178 (HMM): TraL protein TIGR02762 (HMM): type IV conjugative transfer system protein TraL PF05245 (HMM): PF05101 (HMM): type IV secretory pathway, VirB3-like protein | GO:0009291: unidirectional conjugation GO:0009291: unidirectional conjugation GO:0009291: unidirectional conjugation GO:0009291: unidirectional conjugation |
| T4SS protein TraV/TrbH/VirB7 | TraV | YES | TIGR02747 (HMM): type IV conjugative transfer system protein TraV | GO:0009291: unidirectional conjugation |
Parent Properties
| Accession | Name |
|---|---|
| GenProp0489 | F-type conjugation system |
Sibling Properties
| Accession | Name |
|---|---|
| GenProp0484 | F-type conjugation system (type IV secretion) specific components |