| Accession | GenProp0670 |
| Name | CRISPR system, Aferr subtype |
| Type | SYSTEM |
| Description | At least ten different systems of proteins associated associated with CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) have been described, such as the Ecoli, Ypest, Nmeni, and Dvulg subtypes. We designate this type Aferr, after Acidithiobacillus ferrooxidans ATCC 23270, where this system is carried on the chromosome rather than on a plasmid, and where it is the only CRISPR subtype in the species. None of the familiar core cas genes, cas1-cas4, is found in A. ferrooxidans, making this type of CRISPR/cas locus unusual. |
| JCVI Role | Other |
| Parent Property | GenProp0021: CRISPR region
|
| Step Name | Step Num | Required | Evidence (Method) | Evidence Go Terms |
|---|
| CRISPR-associated protein, Csf1 | Csf1 | YES | TIGR03114 (HMM): CRISPR type AFERR-associated protein Csf1 | |
| CRISPR-associated protein, Csf2 | Csf2 | YES | TIGR03115 (HMM): CRISPR type AFERR-associated protein Csf2 | |
| CRISPR-associated protein, Csf3 | Csf3 | YES | TIGR03116 (HMM): CRISPR type AFERR-associated protein Csf3 | |
| CRISPR-associated DEAH-box helicase Csf4 | Csf4 | YES | TIGR03117 (HMM): CRISPR type AFERR-associated DEAD/DEAH-box helicase Csf4 | |
| Accession | Name |
|---|
| GenProp0310 | CRISPR system, Ypest subtype |
| GenProp0313 | CRISPR system, Dvulg subtype |
| GenProp0314 | CRISPR system, Nmeni subtype |
| GenProp0315 | CRISPR system, Ecoli subtype |
| GenProp0316 | CRISPR RAMP module |
| GenProp0317 | CRISPR system, Tneap subtype |
| GenProp0318 | CRISPR system, Mtube subtype (RAMP-like) |
| GenProp0319 | CRISPR system, Apern subtype (Archaea specific) |
| GenProp0320 | CRISPR system, Hmari subtype |
| GenProp0469 | CRISPR system, Dpsyc subtype |
| GenProp0685 | CRISPR system, Cyano subtype |
| GenProp0768 | CRISPR system, Pging subtype |
| GenProp0922 | CRISPR system, Myxan subtype |
| GenProp1061 | CRISPR system, PreFran subtype |
