Genome Property Definition Page

AccessionGenProp0682
Nameformate-dependent nitrite reductase, seven-gene type
TypeSYSTEM
DescriptionThis property describes a multiheme enzyme, cytochrome c nitrite reductase, and accessory proteins that may or may not be present. This enzyme allows formate-dependent nitrite reduction all the way to ammonia. Three of the accessory proteins are closely homologous to three genes of system I for c-type cytochrome biogenesis. This property describes the system as encoded by a seven-gene operon in Escherichia coli, six of which are modeled explicitly for this property. Several of the genes occur as paralogs of genes from the CcmABCDEFGH c-type cytochrome biogenesis system present in the same genomes. The most distinctive protein from this system is a pentaheme cytochrome c, NrfB, modeled by TIGR03146.
Parent PropertyGenProp0070: energy metabolism
GenProp0202: nitrogen metabolism
GenProp0070: energy metabolism
GenProp0202: nitrogen metabolism
GenProp0070: energy metabolism
GenProp0202: nitrogen metabolism

Components
Step NameStep NumRequiredEvidence (Method)Evidence Go Terms
cytochrome c552NrfAYESPF02335 (HMM): cytochrome c552
PF02335 (HMM): cytochrome c552
cytochrome c552NrfAYESPF02335 (HMM): cytochrome c552
PF02335 (HMM): cytochrome c552
cytochrome c552NrfAYESPF02335 (HMM): cytochrome c552
PF02335 (HMM): cytochrome c552
penta-heme cytochrome cNrfBYESTIGR03146 (HMM): cytochrome c nitrite reductase, pentaheme subunit
TIGR03146 (HMM): cytochrome c nitrite reductase, pentaheme subunit
penta-heme cytochrome cNrfBYESTIGR03146 (HMM): cytochrome c nitrite reductase, pentaheme subunit
TIGR03146 (HMM): cytochrome c nitrite reductase, pentaheme subunit
penta-heme cytochrome cNrfBYESTIGR03146 (HMM): cytochrome c nitrite reductase, pentaheme subunit
TIGR03146 (HMM): cytochrome c nitrite reductase, pentaheme subunit
cytochrome c nitrite reductase, NrfC subunitNrfCYESTIGR03149 (HMM): cytochrome c nitrite reductase, Fe-S protein
TIGR03149 (HMM): cytochrome c nitrite reductase, Fe-S protein
cytochrome c nitrite reductase, NrfC subunitNrfCYESTIGR03149 (HMM): cytochrome c nitrite reductase, Fe-S protein
TIGR03149 (HMM): cytochrome c nitrite reductase, Fe-S protein
cytochrome c nitrite reductase, NrfC subunitNrfCYESTIGR03149 (HMM): cytochrome c nitrite reductase, Fe-S protein
TIGR03149 (HMM): cytochrome c nitrite reductase, Fe-S protein
cytochrome c nitrite reductase, NrfD subunitNrfDYESTIGR03148 (HMM): cytochrome c nitrite reductase, NrfD subunit
TIGR03148 (HMM): cytochrome c nitrite reductase, NrfD subunit
cytochrome c nitrite reductase, NrfD subunitNrfDYESTIGR03148 (HMM): cytochrome c nitrite reductase, NrfD subunit
TIGR03148 (HMM): cytochrome c nitrite reductase, NrfD subunit
cytochrome c nitrite reductase, NrfD subunitNrfDYESTIGR03148 (HMM): cytochrome c nitrite reductase, NrfD subunit
TIGR03148 (HMM): cytochrome c nitrite reductase, NrfD subunit
accessory protein NrfENrfENOTIGR03145 (HMM): cytochrome c nitrate reductase biogenesis protein NrfE
TIGR03145 (HMM): cytochrome c nitrate reductase biogenesis protein NrfE
accessory protein NrfENrfENOTIGR03145 (HMM): cytochrome c nitrate reductase biogenesis protein NrfE
TIGR03145 (HMM): cytochrome c nitrate reductase biogenesis protein NrfE
accessory protein NrfENrfENOTIGR03145 (HMM): cytochrome c nitrate reductase biogenesis protein NrfE
TIGR03145 (HMM): cytochrome c nitrate reductase biogenesis protein NrfE
accessory protein NrfFNrfFYESTIGR03147 (HMM): cytochrome c nitrite reductase, accessory protein NrfF
TIGR03147 (HMM): cytochrome c nitrite reductase, accessory protein NrfF
accessory protein NrfFNrfFYESTIGR03147 (HMM): cytochrome c nitrite reductase, accessory protein NrfF
TIGR03147 (HMM): cytochrome c nitrite reductase, accessory protein NrfF
accessory protein NrfFNrfFYESTIGR03147 (HMM): cytochrome c nitrite reductase, accessory protein NrfF
TIGR03147 (HMM): cytochrome c nitrite reductase, accessory protein NrfF

Parent Properties
AccessionName
GenProp0070energy metabolism
GenProp0202nitrogen metabolism
GenProp0070energy metabolism
GenProp0202nitrogen metabolism
GenProp0070energy metabolism
GenProp0202nitrogen metabolism


Sibling Properties
AccessionName
GenProp0011methanogenesis
GenProp0023glyoxylate shunt
GenProp0027photosynthesis
GenProp0033TCA cycle
GenProp0120pentose phosphate cycle
GenProp0131electron transport
GenProp0243ATP synthases
GenProp0298fermentation
GenProp0459D-xylose utilization (conversion to D-xylulose-5-phosphate)
GenProp0468Entner-Doudoroff pathway
GenProp0473arsenite oxidase
GenProp0611aerobic respiration
GenProp0636respiratory nitrate reductase
GenProp0637anaerobic dimethyl sulfoxide reductase
GenProp0638trimethylamine N-oxide reductase system
GenProp0683cytochrome c nitrite reductase NrfHA
GenProp0691glycolysis
GenProp0695cytochrome b558/566
GenProp0723hydrogenase, nickel and F420-dependent
GenProp0737anaerobic glycerol-3-phosphate dehydrogenase complex
GenProp0755pyruvate conversion to propionate, anaerobic, FAD/NAD-regenerating
GenProp0756fumarate reductase complex
GenProp0764DMSO reductase family type II enzyme
GenProp08412-oxoacid:ferredoxin oxidoreductase
GenProp0856bacterio-opsin system
GenProp0914hydrogenase, [FeFe]-dependent
GenProp0915hydrogenase, mono-iron type
GenProp1089B12-dependent trimeric diol/glycerol dehydratase
GenProp1101quinoprotein cytochrome relay system
GenProp0029nitrogen fixation
GenProp0200periplasmic nitrate reductase
GenProp0666membrane-associated monooxygenase (methane/ammonia)
GenProp0814urea utilization
GenProp0899nitrile hydratase