Genome Property Definition Page

AccessionGenProp0714
Namegalactarate utilization via tartronate semi-aldehyde
TypeSYSTEM
DescriptionD-galactarate (D-Mucic acid, 2,3,4,5-tetrahydroxyhexanedioic acid) may be utilized by this pathway involving the lyase GarL which produces pyruvate and tartronate semi-aldehyde (which may then be furter converted to 3-phosphoglycerate).
Parent PropertyGenProp0142: catabolism
Gene Ontology TermGO:0019582: D-galactarate catabolic process (biological_process)

Components
Step NameStep NumRequiredEvidence (Method)Evidence Go Terms
galactarate dehydratase (4.2.1.42)GarDYESPF04295 (HMM): D-galactarate dehydratase/altronate hydrolase, C-terminalGO:0019582: D-galactarate catabolic process
glycerate kinase (2.7.1.31)GarKYESTIGR00045 (HMM-CLUST): glycerate kinaseGO:0019582: D-galactarate catabolic process
5-dehydro-4-deoxy-D-glucarate lyase (4.1.2.20)GarLYESTIGR03239 (HMM): 2-dehydro-3-deoxyglucarate aldolaseGO:0019582: D-galactarate catabolic process
tartronate semialdehyde reductase (1.1.1.60)GarRYESTIGR01505 (HMM): 2-hydroxy-3-oxopropionate reductaseGO:0019582: D-galactarate catabolic process
possible clustered epimeraseepim?NOPF01263 (MANUAL): aldose 1-epimeraseGO:0019582: D-galactarate catabolic process
D-galactarate transporter, putativetranspNOTIGR00786 (HMM-CLUST): TRAP transporter, DctM subunit
PF04290 (HMM-CLUST): TRAP transporter, DctQ-like membrane protein
TIGR00787 (HMM-CLUST): TRAP transporter solute receptor, DctP family
TIGR00893 (HMM-CLUST): D-galactonate transporter
TIGR00786 (HMM-CLUST): TRAP transporter, DctM subunit
GO:0019582: D-galactarate catabolic process
GO:0019582: D-galactarate catabolic process
GO:0019582: D-galactarate catabolic process
GO:0019582: D-galactarate catabolic process
GO:0019582: D-galactarate catabolic process

Parent Properties
AccessionName
GenProp0142catabolism


Sibling Properties
AccessionName
GenProp0055polyhydroxyalkanoic acids
GenProp0141galactose-6-phosphate degradation via tagatose-6-phosphate
GenProp0156cyanophycin-like storage polymers
GenProp0168glycogen system
GenProp0210phenylacetic acid catabolism
GenProp02314-hydroxyphenylacetate degradation
GenProp0233GABA utilization
GenProp02382-aminoethylphosphonate catabolism to acetaldehyde
GenProp0239propionyl-CoA catabolism
GenProp0241phosphonate catabolism
GenProp0271trehalose utilization
GenProp0272pyruvate fermentation to acetoin
GenProp0273protocatechuate degradation to beta-ketoadipate
GenProp0283beta-ketoadipate degradation to succinyl-CoA and acetyl-CoA
GenProp0294ethanolamine catabolism to acetaldehyde
GenProp0457rhamnose catabolism
GenProp0458fucose catabolism
GenProp0461utilization of deoxynucleosides
GenProp0653ectoine catabolism
GenProp0674malonate decarboxylase
GenProp0686allantoin catabolism to glyoxalate and urea
GenProp0687allantoin catabolism to oxamate and carbamoyl-phosphate
GenProp0688urate catabolism to allantoin
GenProp0691glycolysis
GenProp0693fructose utilization as fructose-1,6-bisphosphate
GenProp0694glucose utilization as fructose-1,6-bisphosphate
GenProp0700purine catabolism via urate, xanthine and allantoin
GenProp0702benzoyl-CoA reductase
GenProp07034-hydroxybenzoyl-CoA reductase
GenProp0706cyclohexa-1,5-diene-1-carbonyl-CoA to 3-hydroxypimelyl-CoA, dch/had/oah pathway
GenProp0708catechol meta-cleavage pathway
GenProp0709benzoate catabolism BoxABC pathway
GenProp0711catechol ortho-cleavage upper pathway
GenProp0715galactarate utilization via 2-oxoglutarate semialdehyde
GenProp0716glucarate utilization via tartronate semi-aldehyde
GenProp0717glucarate utilization via 2-oxoglutarate semialdehyde
GenProp0718oxalate degradation
GenProp0734amino acid catabolism
GenProp0749choline sulfate utilization
GenProp0760putrescine degradation to GABA via gamma-glutamylation
GenProp0763nicotinate fermentation to pyruvate and propionate
GenProp0813pyrimidine utilization operon, RutABCDEFGR
GenProp0902quinohemoprotein amine dehydrogenase
GenProp1071myo-inositol catabolism
GenProp1072cyanase system
GenProp1076choline TMA-lyase system