Genome Property Definition Page
| Accession | GenProp0758 |
| Name | lycopene biosynthesis from IPP |
| Type | METAPATH |
| Parent Property | GenProp0077: natural products biosynthesis GenProp0838: lipid biosynthesis |
Components
| Step Name | Step Num | Required | Evidence (Method) | Evidence Go Terms |
|---|---|---|---|---|
| source of IPP | IPP-in | NO | GenProp0048 (GENPROP): IPP biosynthesis via deoxyxylulose GenProp0047 (GENPROP): IPP biosynthesis via mevalonate | |
| phytoene synthase (2.5.1.32) | crtB | YES | PF00494 (HMM): squalene/phytoene synthase | |
| lycopene cyclases | crtLY | NO | TIGR01790 (HMM): lycopene cyclase family protein TIGR03462 (HMM): lycopene cyclase domain PF05834 (HMM-CLUST): lycopene cyclase protein | |
| beta carotene hydroxylase | crtZ | NO | ||
| isopentenyl-diphosphate delta-isomerase (5.3.3.2) | idi | NO | TIGR02150 (HMM): isopentenyl-diphosphate delta-isomerase TIGR02151 (HMM): isopentenyl-diphosphate delta-isomerase, type 2 | |
| geranylgeranyl pyrophosphate synthase | ispA | YES | PF00348 (HMM): polyprenyl synthetase | |
| uncharacterized syntenic membrane protein | membr | NO | TIGR03459 (HMM): carotene biosynthesis associated membrane protein TIGR03460 (HMM): carotene biosynthesis associated membrane protein | |
| phytoene desaturase (1.14.99.-) | pds | YES | TIGR02731 (HMM): phytoene desaturase TIGR02734 (HMM): phytoene desaturase | |
| zeta-carotene desaturase (1.14.99.30) | zds | YES | TIGR02732 (HMM): 9,9'-di-cis-zeta-carotene desaturase TIGR02734 (HMM): phytoene desaturase |
Parent Properties
| Accession | Name |
|---|---|
| GenProp0077 | natural products biosynthesis |
| GenProp0838 | lipid biosynthesis |
Sibling Properties
| Accession | Name |
|---|---|
| GenProp0014 | polyketide biosynthesis, type I |
| GenProp0015 | polyketide biosynthesis, type II |
| GenProp0040 | thiotemplate type non-ribosomal peptide biosynthesis |
| GenProp0169 | hybrid NRPS-PKS natural pruduct biosynthesis genes |
| GenProp0724 | phosphonoacetaldehyde biosynthesis from phosphoenolpyruvate |
| GenProp0757 | quorum-sensing, autoinducer-2 system |
| GenProp0770 | siderophore biosynthesis |
| GenProp0807 | bacteriocin system, heterocycle biosynthesis group |
| GenProp0808 | bacteriocin system, TIGR01847 leader group |
| GenProp0809 | bacteriocin system, lactococcin 972 group |
| GenProp0810 | bacteriocin system, linocin M18 group |
| GenProp0823 | violacein biosynthesis |
| GenProp0825 | bacteriocin system, circular bacteriocin group |
| GenProp0853 | lantibiotic system, gallidermin/epidermin family |
| GenProp0861 | bacteriocin system, NHLP (nif11/nitrile hydratase leader peptide) transport group |
| GenProp0901 | post-ribosomal natural product synthesis system, Burkholderia TOMM-type |
| GenProp0919 | SCIFF/radical SAM Clostridial gene pair |
| GenProp0920 | radical SAM Y_X(10)_GDL system |
| GenProp0921 | radical SAM pair and His-Xaa-Ser repeats peptide |
| GenProp0936 | bacteriocin system, sporulation delay protein group |
| GenProp0945 | radical SAM maturase bacteriocin system, CLI_3235 type |
| GenProp0954 | radical SAM-cylized peptide, Pep1357C family |
| GenProp0955 | modified peptide/radical SAM maturase system, YydFG family |
| GenProp0956 | radical SAM maturase/selenobacteriocin system |
| GenProp0962 | methanobactin biosynthesis, Mb-OB3b family |
| GenProp0967 | radical SAM maturase system, CXXX repeats type |
| GenProp0982 | radical SAM maturase system, FibroRumin system |
| GenProp0984 | radical SAM maturase system, GG-Bacteroidales group |
| GenProp0990 | cobaltopeptin biosynthesis |
| GenProp0991 | ATP-grasp maturase system, microviridin/marinostatin class |
| GenProp1000 | ATP-grasp maturase system, uncharacterized |
| GenProp1002 | grasp-with-spasm peptide maturase system |
| GenProp1003 | cysteine S-glycopeptide biosynthesis, sublancin family |
| GenProp1029 | radical SAM/SPASM system SynChlorMet |
| GenProp1037 | radical SAM/SPASM system GRRM |
| GenProp1052 | geopeptide radical SAM/SPASM maturase system |
| GenProp1062 | radical SAM/SPASM system Clo7bot |
| GenProp1065 | radical SAM/SPASM TIGR04347/TIGR04031 system |
| GenProp1078 | sporulation killing factor system |
| GenProp0046 | IPP biosynthesis |
| GenProp0136 | ubiquinone biosynthesis from chorismate, aerobic |
| GenProp0297 | lipopolysaccharide biosynthesis |
| GenProp0299 | fatty acid biosynthesis |
| GenProp0761 | hopanoid lipid biosynthesis |
| GenProp0836 | menaquinone biosynthesis |
| GenProp0837 | 1-acylglycerol-3-phosphate biosynthesis, PlsX/Y pathway |