Genome Property Definition Page

AccessionGenProp0758
Namelycopene biosynthesis from IPP
TypeMETAPATH
Parent PropertyGenProp0077: natural products biosynthesis
GenProp0838: lipid biosynthesis

Components
Step NameStep NumRequiredEvidence (Method)Evidence Go Terms
source of IPPIPP-inNOGenProp0048 (GENPROP): IPP biosynthesis via deoxyxylulose
GenProp0047 (GENPROP): IPP biosynthesis via mevalonate
phytoene synthase (2.5.1.32)crtBYESPF00494 (HMM): squalene/phytoene synthase
lycopene cyclasescrtLYNOTIGR01790 (HMM): lycopene cyclase family protein
TIGR03462 (HMM): lycopene cyclase domain
PF05834 (HMM-CLUST): lycopene cyclase protein
beta carotene hydroxylasecrtZNO
isopentenyl-diphosphate delta-isomerase (5.3.3.2)idiNOTIGR02150 (HMM): isopentenyl-diphosphate delta-isomerase
TIGR02151 (HMM): isopentenyl-diphosphate delta-isomerase, type 2
geranylgeranyl pyrophosphate synthaseispAYESPF00348 (HMM): polyprenyl synthetase
uncharacterized syntenic membrane proteinmembrNOTIGR03459 (HMM): carotene biosynthesis associated membrane protein
TIGR03460 (HMM): carotene biosynthesis associated membrane protein
phytoene desaturase (1.14.99.-)pdsYESTIGR02731 (HMM): phytoene desaturase
TIGR02734 (HMM): phytoene desaturase
zeta-carotene desaturase (1.14.99.30)zdsYESTIGR02732 (HMM): 9,9'-di-cis-zeta-carotene desaturase
TIGR02734 (HMM): phytoene desaturase

Parent Properties
AccessionName
GenProp0077natural products biosynthesis
GenProp0838lipid biosynthesis


Sibling Properties
AccessionName
GenProp0014polyketide biosynthesis, type I
GenProp0015polyketide biosynthesis, type II
GenProp0040thiotemplate type non-ribosomal peptide biosynthesis
GenProp0169hybrid NRPS-PKS natural pruduct biosynthesis genes
GenProp0724phosphonoacetaldehyde biosynthesis from phosphoenolpyruvate
GenProp0757quorum-sensing, autoinducer-2 system
GenProp0770siderophore biosynthesis
GenProp0807bacteriocin system, heterocycle biosynthesis group
GenProp0808bacteriocin system, TIGR01847 leader group
GenProp0809bacteriocin system, lactococcin 972 group
GenProp0810bacteriocin system, linocin M18 group
GenProp0823violacein biosynthesis
GenProp0825bacteriocin system, circular bacteriocin group
GenProp0853lantibiotic system, gallidermin/epidermin family
GenProp0861bacteriocin system, NHLP (nif11/nitrile hydratase leader peptide) transport group
GenProp0901post-ribosomal natural product synthesis system, Burkholderia TOMM-type
GenProp0919SCIFF/radical SAM Clostridial gene pair
GenProp0920radical SAM Y_X(10)_GDL system
GenProp0921radical SAM pair and His-Xaa-Ser repeats peptide
GenProp0936bacteriocin system, sporulation delay protein group
GenProp0945radical SAM maturase bacteriocin system, CLI_3235 type
GenProp0954radical SAM-cylized peptide, Pep1357C family
GenProp0955modified peptide/radical SAM maturase system, YydFG family
GenProp0956radical SAM maturase/selenobacteriocin system
GenProp0962methanobactin biosynthesis, Mb-OB3b family
GenProp0967radical SAM maturase system, CXXX repeats type
GenProp0982radical SAM maturase system, FibroRumin system
GenProp0984radical SAM maturase system, GG-Bacteroidales group
GenProp0990cobaltopeptin biosynthesis
GenProp0991ATP-grasp maturase system, microviridin/marinostatin class
GenProp1000ATP-grasp maturase system, uncharacterized
GenProp1002grasp-with-spasm peptide maturase system
GenProp1003cysteine S-glycopeptide biosynthesis, sublancin family
GenProp1029radical SAM/SPASM system SynChlorMet
GenProp1037radical SAM/SPASM system GRRM
GenProp1052geopeptide radical SAM/SPASM maturase system
GenProp1062radical SAM/SPASM system Clo7bot
GenProp1065radical SAM/SPASM TIGR04347/TIGR04031 system
GenProp1078sporulation killing factor system
GenProp1083cyanobactin-like ribosomal natural product biosynthesis
GenProp1084enduracididine biosynthesis
GenProp1090radical SAM/SPASM maturase system XYE
GenProp0046IPP biosynthesis
GenProp0136ubiquinone biosynthesis from chorismate, aerobic
GenProp0297lipopolysaccharide biosynthesis
GenProp0299fatty acid biosynthesis
GenProp0761hopanoid lipid biosynthesis
GenProp0836menaquinone biosynthesis
GenProp08371-acylglycerol-3-phosphate biosynthesis, PlsX/Y pathway