Genome Property Definition Page

AccessionGenProp0758
Namelycopene biosynthesis from IPP
TypeMETAPATH
Parent PropertyGenProp0077: natural products biosynthesis
GenProp0077: natural products biosynthesis
GenProp0077: natural products biosynthesis
GenProp0838: lipid biosynthesis
GenProp0838: lipid biosynthesis
GenProp0838: lipid biosynthesis

Components
Step NameStep NumRequiredEvidence (Method)Evidence Go Terms
source of IPPIPP-inNOGenProp0048 (GENPROP): IPP biosynthesis via deoxyxylulose
GenProp0047 (GENPROP): IPP biosynthesis via mevalonate
source of IPPIPP-inNOGenProp0048 (GENPROP): IPP biosynthesis via deoxyxylulose
GenProp0047 (GENPROP): IPP biosynthesis via mevalonate
source of IPPIPP-inNOGenProp0048 (GENPROP): IPP biosynthesis via deoxyxylulose
GenProp0047 (GENPROP): IPP biosynthesis via mevalonate
phytoene synthase (2.5.1.32)crtBYESPF00494 (HMM): squalene/phytoene synthase
phytoene synthase (2.5.1.32)crtBYESPF00494 (HMM): squalene/phytoene synthase
phytoene synthase (2.5.1.32)crtBYESPF00494 (HMM): squalene/phytoene synthase
lycopene cyclasescrtLYNOTIGR01790 (HMM): lycopene cyclase family protein
TIGR03462 (HMM): lycopene cyclase domain
PF05834 (HMM-CLUST): lycopene cyclase protein
lycopene cyclasescrtLYNOTIGR01790 (HMM): lycopene cyclase family protein
TIGR03462 (HMM): lycopene cyclase domain
PF05834 (HMM-CLUST): lycopene cyclase protein
lycopene cyclasescrtLYNOTIGR01790 (HMM): lycopene cyclase family protein
TIGR03462 (HMM): lycopene cyclase domain
PF05834 (HMM-CLUST): lycopene cyclase protein
beta carotene hydroxylasecrtZNO
beta carotene hydroxylasecrtZNO
beta carotene hydroxylasecrtZNO
isopentenyl-diphosphate delta-isomerase (5.3.3.2)idiNOTIGR02150 (HMM): isopentenyl-diphosphate delta-isomerase
TIGR02151 (HMM): isopentenyl-diphosphate delta-isomerase, type 2
isopentenyl-diphosphate delta-isomerase (5.3.3.2)idiNOTIGR02150 (HMM): isopentenyl-diphosphate delta-isomerase
TIGR02151 (HMM): isopentenyl-diphosphate delta-isomerase, type 2
isopentenyl-diphosphate delta-isomerase (5.3.3.2)idiNOTIGR02150 (HMM): isopentenyl-diphosphate delta-isomerase
TIGR02151 (HMM): isopentenyl-diphosphate delta-isomerase, type 2
geranylgeranyl pyrophosphate synthaseispAYESPF00348 (HMM): polyprenyl synthetase
geranylgeranyl pyrophosphate synthaseispAYESPF00348 (HMM): polyprenyl synthetase
geranylgeranyl pyrophosphate synthaseispAYESPF00348 (HMM): polyprenyl synthetase
uncharacterized syntenic membrane proteinmembrNOTIGR03459 (HMM): carotene biosynthesis associated membrane protein
TIGR03460 (HMM): carotene biosynthesis associated membrane protein
uncharacterized syntenic membrane proteinmembrNOTIGR03459 (HMM): carotene biosynthesis associated membrane protein
TIGR03460 (HMM): carotene biosynthesis associated membrane protein
uncharacterized syntenic membrane proteinmembrNOTIGR03459 (HMM): carotene biosynthesis associated membrane protein
TIGR03460 (HMM): carotene biosynthesis associated membrane protein
phytoene desaturase (1.14.99.-)pdsYESTIGR02731 (HMM): phytoene desaturase
TIGR02734 (HMM): phytoene desaturase
phytoene desaturase (1.14.99.-)pdsYESTIGR02731 (HMM): phytoene desaturase
TIGR02734 (HMM): phytoene desaturase
phytoene desaturase (1.14.99.-)pdsYESTIGR02731 (HMM): phytoene desaturase
TIGR02734 (HMM): phytoene desaturase
zeta-carotene desaturase (1.14.99.30)zdsYESTIGR02732 (HMM): 9,9'-di-cis-zeta-carotene desaturase
TIGR02734 (HMM): phytoene desaturase
zeta-carotene desaturase (1.14.99.30)zdsYESTIGR02732 (HMM): 9,9'-di-cis-zeta-carotene desaturase
TIGR02734 (HMM): phytoene desaturase
zeta-carotene desaturase (1.14.99.30)zdsYESTIGR02732 (HMM): 9,9'-di-cis-zeta-carotene desaturase
TIGR02734 (HMM): phytoene desaturase

Parent Properties
AccessionName
GenProp0077natural products biosynthesis
GenProp0077natural products biosynthesis
GenProp0077natural products biosynthesis
GenProp0838lipid biosynthesis
GenProp0838lipid biosynthesis
GenProp0838lipid biosynthesis


Sibling Properties
AccessionName
GenProp0014polyketide biosynthesis, type I
GenProp0015polyketide biosynthesis, type II
GenProp0040thiotemplate type non-ribosomal peptide biosynthesis
GenProp0169hybrid NRPS-PKS natural pruduct biosynthesis genes
GenProp0724phosphonoacetaldehyde biosynthesis from phosphoenolpyruvate
GenProp0757quorum-sensing, autoinducer-2 system
GenProp0770siderophore biosynthesis
GenProp0807bacteriocin system, heterocycle biosynthesis group
GenProp0808bacteriocin system, TIGR01847 leader group
GenProp0809bacteriocin system, lactococcin 972 group
GenProp0823violacein biosynthesis
GenProp0825bacteriocin system, circular bacteriocin group
GenProp0853lantibiotic system, gallidermin/epidermin family
GenProp0861bacteriocin system, NHLP (nif11/nitrile hydratase leader peptide) transport group
GenProp0901post-ribosomal natural product synthesis system, Burkholderia TOMM-type
GenProp0919SCIFF/radical SAM Clostridial gene pair
GenProp0920radical SAM Y_X(10)_GDL system
GenProp0921radical SAM pair and His-Xaa-Ser repeats peptide
GenProp0936bacteriocin system, sporulation delay protein group
GenProp0945radical SAM maturase bacteriocin system, CLI_3235 type
GenProp0954radical SAM-cylized peptide, Pep1357C family
GenProp0955modified peptide/radical SAM maturase system, YydFG family
GenProp0956radical SAM maturase/selenobacteriocin system
GenProp0962methanobactin biosynthesis, Mb-OB3b family
GenProp0967radical SAM maturase system, CXXX repeats type
GenProp0982radical SAM maturase system, FibroRumin system
GenProp0984radical SAM maturase system, GG-Bacteroidales group
GenProp0990cobaltopeptin biosynthesis
GenProp0991ATP-grasp maturase system, microviridin/marinostatin class
GenProp1000ATP-grasp maturase system, uncharacterized
GenProp1002grasp-with-spasm peptide maturase system
GenProp1003cysteine S-glycopeptide biosynthesis, sublancin family
GenProp1029radical SAM/SPASM system SynChlorMet
GenProp1037radical SAM/SPASM system GRRM
GenProp1052geopeptide radical SAM/SPASM maturase system
GenProp1062radical SAM/SPASM system Clo7bot
GenProp1065radical SAM/SPASM TIGR04347/TIGR04031 system
GenProp1078sporulation killing factor system
GenProp1083cyanobactin-like ribosomal natural product biosynthesis
GenProp1084enduracididine biosynthesis
GenProp1090radical SAM/SPASM maturase system XYE
GenProp1097bacimethrin biosynthesis
GenProp10983-methylarginine biosynthesis
GenProp0046IPP biosynthesis
GenProp0136ubiquinone biosynthesis from chorismate, aerobic
GenProp0297lipopolysaccharide biosynthesis
GenProp0299fatty acid biosynthesis
GenProp0761hopanoid lipid biosynthesis
GenProp0836menaquinone biosynthesis
GenProp08371-acylglycerol-3-phosphate biosynthesis, PlsX/Y pathway