Genome Property Definition Page

Namebacterial core gene set, exactly 1 per genome
DescriptionThis set of genes includes those which are generally found exactly one to a bacterial genome and tend to exhibit little to no lateral gene transfer events. An evaluation of 311 publicly available bacterial genomes found greater than 95% having exactly one copy of each of these genes. In certain cases, such as with glycyl-tRNA synthetase, one or more separate homofunctional gene families may combine to completely cover all bacterial genomes.
Parent PropertyGenProp0067: quantitative content

Step NameStep NumRequiredEvidence (Method)Evidence Go Terms
Alanyl-tRNA synthetasealaSYESTIGR00344 (HMM): alanine--tRNA ligase
Arginyl-tRNA synthetaseargSYESPF00750 (HMM): arginine--tRNA ligase
Aspartyl-tRNA synthetaseaspSYESTIGR00459 (HMM): aspartate--tRNA ligase
Obg family GTPase CgtAcgtAYESTIGR02729 (HMM): Obg family GTPase CgtA
dephospho-CoA kinasecoaEYESTIGR00152 (HMM): dephospho-CoA kinase
cysteinyl-tRNA synthetasecysSYESTIGR00435 (HMM): cysteine--tRNA ligase
chromosomal replication initiator protein DnaAdnaAYESTIGR00362 (HMM): chromosomal replication initiator protein DnaA
DNA primasednaGYESTIGR01391 (HMM): DNA primase
chaperone protein DnaKdnaKYESTIGR02350 (HMM): chaperone protein DnaK
DNA polymerase III, beta subunitdnaNYESTIGR00663 (HMM): DNA polymerase III, beta subunit
DNA polymerase III, subunits gamma and taudnaXYESTIGR02397 (HMM): DNA polymerase III, subunit gamma and tau
ribosome-associated GTPase EngAengAYESTIGR03594 (HMM): ribosome-associated GTPase EngA
GTP-binding protein EraeraYESTIGR00436 (HMM): GTP-binding protein Era
signal recognition particle proteinffhYESTIGR00959 (HMM): signal recognition particle protein
methionyl-tRNA formyltransferasefmtYESTIGR00460 (HMM): methionyl-tRNA formyltransferase
ribosome recycling factorfrrYESTIGR00496 (HMM): ribosome recycling factor
signal recognition particle-docking protein FtsYftsYYESTIGR00064 (HMM): signal recognition particle-docking protein FtsY
glycyl-tRNA synthetaseglySYESTIGR00389 (HMM): glycine--tRNA ligase
TIGR00388 (HMM): glycine--tRNA ligase, alpha subunit
guanylate kinasegmkYESTIGR03263 (HMM): guanylate kinase
co-chaperone GrpEgrpEYESPF01025 (HMM): co-chaperone GrpE
DNA gyrase, A subunitgyrAYESTIGR01063 (HMM): DNA gyrase, A subunit
DNA gyrase, B subunitgyrBYESTIGR01059 (HMM): DNA gyrase, B subunit
histidyl-tRNA synthetasehisSYESTIGR00442 (HMM): histidine--tRNA ligase
isoleucyl-tRNA synthetaseileSYESTIGR00392 (HMM): isoleucine--tRNA ligase
translation initiation factor IF-2infBYESTIGR00487 (HMM): translation initiation factor IF-2
translation initiation factor IF-3infCYESTIGR00168 (HMM): translation initiation factor IF-3
dimethyladenosine transferaseksgAYESTIGR00755 (HMM): ribosomal RNA small subunit methyltransferase A
GTP-binding protein LepAlepAYESTIGR01393 (HMM): elongation factor 4
leucyl-tRNA synthetaseleuSYESTIGR00396 (HMM): leucine--tRNA ligase
DNA ligase, NAD-dependentligAYESTIGR00575 (HMM): DNA ligase, NAD-dependent
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferasemnmAYESTIGR00420 (HMM): tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
MraW methylase familymraWYESPF01795 (HMM): MraW methylase family
transcription termination factor NusAnusAYESTIGR01953 (HMM): transcription termination factor NusA
transcription termination/antitermination factor NusGnusGYESTIGR00922 (HMM): transcription termination/antitermination factor NusG
phosphoglycerate kinasepgkYESPF00162 (HMM): phosphoglycerate kinase
phenylalanyl-tRNA synthetase, alpha subunitpheSYESTIGR00468 (HMM): phenylalanine--tRNA ligase, alpha subunit
phenylalanyl-tRNA synthetase, beta subunitpheTYESTIGR00471 (HMM): phenylalanine--tRNA ligase, beta subunit
TIGR00472 (HMM): phenylalanine--tRNA ligase, beta subunit
peptide chain release factor 1prfAYESTIGR00019 (HMM): peptide chain release factor 1
prolyl-tRNA synthetaseproSYESTIGR00408 (HMM): proline--tRNA ligase
TIGR00409 (HMM): proline--tRNA ligase
CTP synthasepyrGYESTIGR00337 (HMM): CTP synthase
recA proteinrecAYESTIGR02012 (HMM): protein RecA
ribosome-binding factor ArfbAYESTIGR00082 (HMM): ribosome-binding factor A
ribonuclease IIIrncYESTIGR02191 (HMM): ribonuclease III
ribosomal protein L1rplAYESTIGR01169 (HMM): ribosomal protein L1
ribosomal protein L2rplBYESTIGR01171 (HMM): ribosomal protein L2
ribosomal protein L3rplCYESPF00297 (HMM): ribosomal protein L3
ribosomal protein L4rplDYESPF00573 (HMM): ribosomal protein L4/L1 family
ribosomal protein L5rplEYESPF00281 (HMM): ribosomal protein L5
ribosomal protein L6rplFYESPF00347 (HMM): ribosomal protein L6
ribosomal protein L9rplIYESTIGR00158 (HMM): ribosomal protein L9
ribosomal protein L10rplJYESPF00466 (HMM): ribosomal protein L10
ribosomal protein L11rplKYESTIGR01632 (HMM): ribosomal protein L11
ribosomal protein L7/L12rplLYESTIGR00855 (HMM): ribosomal protein L7/L12
ribosomal protein L13rplMYESTIGR01066 (HMM): ribosomal protein L13
ribosomal protein L14rplNYESTIGR01067 (HMM): ribosomal protein L14
ribosomal protein L15rplOYESTIGR01071 (HMM): ribosomal protein L15
ribosomal protein L16rplPYESTIGR01164 (HMM): ribosomal protein L16
ribosomal protein L17rplQYESTIGR00059 (HMM): ribosomal protein L17
ribosomal protein L18rplRYESTIGR00060 (HMM): ribosomal protein L18
ribosomal protein L19rplSYESTIGR01024 (HMM): ribosomal protein L19
ribosomal protein L20rplTYESTIGR01032 (HMM): ribosomal protein L20
ribosomal protein L21rplUYESTIGR00061 (HMM): ribosomal protein L21
ribosomal protein L22rplVYESTIGR01044 (HMM): ribosomal protein L22
ribosomal protein L23rplWYESPF00276 (HMM): ribosomal protein L23
ribosomal protein L24rplXYESTIGR01079 (HMM): ribosomal protein L24
ribosomal protein L27rpmAYESTIGR00062 (HMM): ribosomal protein L27
ribosomal protein L28rpmBYESTIGR00009 (HMM): ribosomal protein L28
ribosomal protein L29rpmCYESTIGR00012 (HMM): ribosomal protein L29
ribosomal protein L32rpmFYESTIGR01031 (HMM): ribosomal protein L32
ribosomal protein L34rpmHYESTIGR01030 (HMM): ribosomal protein L34
ribosomal protein L35rpmIYESTIGR00001 (HMM): ribosomal protein L35
DNA-directed RNA polymerase, alpha subunitrpoAYESTIGR02027 (HMM): DNA-directed RNA polymerase, alpha subunit
DNA-directed RNA polymerase, beta subunitrpoBYESTIGR02013 (HMM): DNA-directed RNA polymerase, beta subunit
DNA-directed RNA polymerase, beta' or beta'' subunitrpoCYESTIGR02386 (HMM): DNA-directed RNA polymerase, beta' subunit
TIGR02387 (HMM): DNA-directed RNA polymerase, gamma subunit
ribosomal protein S2rpsBYESTIGR01011 (HMM): ribosomal protein S2
ribosomal protein S3rpsCYESTIGR01009 (HMM): ribosomal protein S3
ribosomal protein S4rpsDYESTIGR01017 (HMM): ribosomal protein S4
ribosomal protein S5rpsEYESTIGR01021 (HMM): ribosomal protein S5
ribosomal protein S6rpsFYESTIGR00166 (HMM): ribosomal protein S6
ribosomal protein S7rpsGYESTIGR01029 (HMM): ribosomal protein S7
ribosomal protein S8rpsHYESPF00410 (HMM): ribosomal protein S8
ribosomal protein S9rpsIYESPF00380 (HMM): ribosomal protein S9
ribosomal protein S10rpsJYESTIGR01049 (HMM): ribosomal protein S10
ribosomal protein S11rpsKYESPF00411 (HMM): ribosomal protein S11
ribosomal protein S12rpsLYESTIGR00981 (HMM): ribosomal protein S12
ribosomal protein S13rpsMYESPF00416 (HMM): ribosomal protein S13p/S18e
ribosomal protein S15rpsOYESTIGR00952 (HMM): ribosomal protein S15
ribosomal protein S16rpsPYESTIGR00002 (HMM): ribosomal protein S16
ribosomal protein S17rpsQYESPF00366 (HMM): ribosomal protein S17
ribosomal protein S18rpsRYESTIGR00165 (HMM): ribosomal protein S18
ribosomal protein S19rpsSYESTIGR01050 (HMM): ribosomal protein S19
ribosomal protein S20rpsTYESTIGR00029 (HMM): ribosomal protein S20
preprotein translocase, SecA subunitsecAYESTIGR00963 (HMM): preprotein translocase, SecA subunit
preprotein translocase, SecE subunitsecEYESTIGR00964 (HMM): preprotein translocase, SecE subunit
preprotein translocase, SecG subunitsecGYESTIGR00810 (HMM): preprotein translocase, SecG subunit
preprotein translocase, SecY subunitsecYYESTIGR00967 (HMM): preprotein translocase, SecY subunit
seryl-tRNA synthetaseserSYESTIGR00414 (HMM): serine--tRNA ligase
SmpB proteinsmpBYESTIGR00086 (HMM): SsrA-binding protein
threonyl-tRNA synthetasethrSYESTIGR00418 (HMM): threonine--tRNA ligase
trigger factortigYESTIGR00115 (HMM): trigger factor
tRNA(Ile)-lysidine synthetasetilSYESTIGR02432 (HMM): tRNA(Ile)-lysidine synthetase
tRNA threonylcarbamoyladenosine modification protein TsaDtsaDYESTIGR03723 (HMM): tRNA threonylcarbamoyl adenosine modification protein TsaD
translation elongation factor TstsfYESTIGR00116 (HMM): translation elongation factor Ts
tyrosyl-tRNA synthetasetyrSYESTIGR00234 (HMM): tyrosine--tRNA ligase
excinuclease ABC, B subunituvrBYESTIGR00631 (HMM): excinuclease ABC subunit B
valyl-tRNA synthetasevalSYESTIGR00422 (HMM): valine--tRNA ligase
16S rRNA maturation RNase YgeYybeYYESTIGR00043 (HMM): probable rRNA maturation factor YbeY
GTP-binding protein YchFychFYESTIGR00092 (HMM): GTP-binding protein YchF

Parent Properties
GenProp0067quantitative content

Sibling Properties
GenProp0003count of DNA molecules
GenProp0004count of predicted proteins
GenProp0005count of tRNAs
GenProp0020HMM hit percentage
GenProp0085DNA GC content
GenProp0086DNA size (megabases)
GenProp0108amino acid abundance (order)
GenProp0122protein average length
GenProp0134functional gene clustering - property level
GenProp0152DNA dinucleotide thermophily metric RR+YY-RY-YR
GenProp0495sequenced plasmids
GenProp0800bacterial core gene set, 1 or more per genome
GenProp0805number of ambiguous nucleotide characters
GenProp0815archaeal-only core gene set
GenProp0831archaeal core gene set, exactly 1 per genome
GenProp0832archaeal core gene set, 1 or more per genome