Genome Property Definition Page

AccessionGenProp0815
Namearchaeal-only core gene set
TypeGUILD
DescriptionThis Genome Property will represent what appear to be universal single-copy archaeal genes recognized (if possible) by HMMs that hit archaeal genomes exclusively. The purpose of this property, during its early stages of development, is to provide a protein-space metric of relative archaeal abundance and genome completeness.
Parent PropertyGenProp0067: quantitative content
GenProp0067: quantitative content
GenProp0067: quantitative content

Components
Step NameStep NumRequiredEvidence (Method)Evidence Go Terms
arCOG04150 KH-domain proteinaC04150YESTIGR03665 (HMM): arCOG04150 universal archaeal KH domain protein
arCOG04150 KH-domain proteinaC04150YESTIGR03665 (HMM): arCOG04150 universal archaeal KH domain protein
arCOG04150 KH-domain proteinaC04150YESTIGR03665 (HMM): arCOG04150 universal archaeal KH domain protein
translation initiation factor aIF-2aIF-2YESTIGR00491 (HMM): translation initiation factor aIF-2
translation initiation factor aIF-2aIF-2YESTIGR00491 (HMM): translation initiation factor aIF-2
translation initiation factor aIF-2aIF-2YESTIGR00491 (HMM): translation initiation factor aIF-2
archaeal ribosomal protein L13Pa_L13PYESTIGR01077 (HMM): ribosomal protein uL13
archaeal ribosomal protein L13Pa_L13PYESTIGR01077 (HMM): ribosomal protein uL13
archaeal ribosomal protein L13Pa_L13PYESTIGR01077 (HMM): ribosomal protein uL13
archaeal ribosomal protein L22Pa_L22YESTIGR01038 (HMM): ribosomal protein uL22
archaeal ribosomal protein L22Pa_L22YESTIGR01038 (HMM): ribosomal protein uL22
archaeal ribosomal protein L22Pa_L22YESTIGR01038 (HMM): ribosomal protein uL22
archaeal ribosomal protein L24Pa_L24YESTIGR01080 (HMM): ribosomal protein uL24
archaeal ribosomal protein L24Pa_L24YESTIGR01080 (HMM): ribosomal protein uL24
archaeal ribosomal protein L24Pa_L24YESTIGR01080 (HMM): ribosomal protein uL24
archaeal ribosomal protein L3Pa_L3YESTIGR03626 (HMM): ribosomal protein uL3
archaeal ribosomal protein L3Pa_L3YESTIGR03626 (HMM): ribosomal protein uL3
archaeal ribosomal protein L3Pa_L3YESTIGR03626 (HMM): ribosomal protein uL3
archaeal ribosomal protein L6Pa_L6PYESTIGR03653 (HMM): ribosomal protein uL6
archaeal ribosomal protein L6Pa_L6PYESTIGR03653 (HMM): ribosomal protein uL6
archaeal ribosomal protein L6Pa_L6PYESTIGR03653 (HMM): ribosomal protein uL6
archaeal ribosomal protein S10Pa_S10PYESTIGR01046 (HMM): ribosomal protein uS10
archaeal ribosomal protein S10Pa_S10PYESTIGR01046 (HMM): ribosomal protein uS10
archaeal ribosomal protein S10Pa_S10PYESTIGR01046 (HMM): ribosomal protein uS10
archaeal ribosomal protein S11Pa_S11PYESTIGR03628 (HMM): ribosomal protein uS11
archaeal ribosomal protein S11Pa_S11PYESTIGR03628 (HMM): ribosomal protein uS11
archaeal ribosomal protein S11Pa_S11PYESTIGR03628 (HMM): ribosomal protein uS11
archaeal ribosomal protein S13Pa_S13PYESTIGR03629 (HMM): ribosomal protein uS13
archaeal ribosomal protein S13Pa_S13PYESTIGR03629 (HMM): ribosomal protein uS13
archaeal ribosomal protein S13Pa_S13PYESTIGR03629 (HMM): ribosomal protein uS13
archaeal ribosomal protein S17Pa_S17PYESTIGR03630 (HMM): ribosomal protein uS17
archaeal ribosomal protein S17Pa_S17PYESTIGR03630 (HMM): ribosomal protein uS17
archaeal ribosomal protein S17Pa_S17PYESTIGR03630 (HMM): ribosomal protein uS17
archaeal ribosomal protein S19Pa_S19PYESTIGR01025 (HMM): ribosomal protein uS19
archaeal ribosomal protein S19Pa_S19PYESTIGR01025 (HMM): ribosomal protein uS19
archaeal ribosomal protein S19Pa_S19PYESTIGR01025 (HMM): ribosomal protein uS19
archaeal ribosomal protein S3Pa_S3PYESTIGR01008 (HMM): ribosomal protein uS3
archaeal ribosomal protein S3Pa_S3PYESTIGR01008 (HMM): ribosomal protein uS3
archaeal ribosomal protein S3Pa_S3PYESTIGR01008 (HMM): ribosomal protein uS3
archaeal ribosomal protein S4Pa_S4PYESTIGR01018 (HMM): ribosomal protein uS4
archaeal ribosomal protein S4Pa_S4PYESTIGR01018 (HMM): ribosomal protein uS4
archaeal ribosomal protein S4Pa_S4PYESTIGR01018 (HMM): ribosomal protein uS4
archaeal ribosomal protein S5Pa_S5PYESTIGR01020 (HMM): ribosomal protein uS5
archaeal ribosomal protein S5Pa_S5PYESTIGR01020 (HMM): ribosomal protein uS5
archaeal ribosomal protein S5Pa_S5PYESTIGR01020 (HMM): ribosomal protein uS5
archaeal ribosomal protein S9Pa_S9PYESTIGR03627 (HMM): ribosomal protein uS9
archaeal ribosomal protein S9Pa_S9PYESTIGR03627 (HMM): ribosomal protein uS9
archaeal ribosomal protein S9Pa_S9PYESTIGR03627 (HMM): ribosomal protein uS9

Parent Properties
AccessionName
GenProp0067quantitative content
GenProp0067quantitative content
GenProp0067quantitative content


Sibling Properties
AccessionName
GenProp0003count of DNA molecules
GenProp0004count of predicted proteins
GenProp0005count of tRNAs
GenProp0020HMM hit percentage
GenProp0085DNA GC content
GenProp0086DNA size (megabases)
GenProp0108amino acid abundance (order)
GenProp0122protein average length
GenProp0134functional gene clustering - property level
GenProp0152DNA dinucleotide thermophily metric RR+YY-RY-YR
GenProp0495sequenced plasmids
GenProp0799bacterial core gene set, exactly 1 per genome
GenProp0800bacterial core gene set, 1 or more per genome
GenProp0805number of ambiguous nucleotide characters
GenProp0831archaeal core gene set, exactly 1 per genome
GenProp0832archaeal core gene set, 1 or more per genome