Genome Property Definition Page

Namearchaeal core gene set, 1 or more per genome
DescriptionThis set of genes includes those which are found in every archaeal genome but may be present in multiple copies generally or in greater than 5% of genomes. An evaluation of 32 publicly available bacterial genomes found greater than 95% having at least one copy of each of these genes.
Parent PropertyGenProp0067: quantitative content

Step NameStep NumRequiredEvidence (Method)Evidence Go Terms
transcription factor SaTF-SYESTIGR01384 (HMM): transcription factor S
tyrosyl-tRNA synthetasetyrSYESTIGR00234 (HMM): tyrosine--tRNA ligase

Parent Properties
GenProp0067quantitative content

Sibling Properties
GenProp0003count of DNA molecules
GenProp0004count of predicted proteins
GenProp0005count of tRNAs
GenProp0020HMM hit percentage
GenProp0085DNA GC content
GenProp0086DNA size (megabases)
GenProp0108amino acid abundance (order)
GenProp0122protein average length
GenProp0134functional gene clustering - property level
GenProp0152DNA dinucleotide thermophily metric RR+YY-RY-YR
GenProp0495sequenced plasmids
GenProp0799bacterial core gene set, exactly 1 per genome
GenProp0800bacterial core gene set, 1 or more per genome
GenProp0805number of ambiguous nucleotide characters
GenProp0815archaeal-only core gene set
GenProp0831archaeal core gene set, exactly 1 per genome