Genome Property Definition Page

AccessionGenProp0855
Nameintegrating conjugative element, PFGI-1 class
TypeSYSTEM
DescriptionThis Genome Property represents a collection of mostly uncharacterized proteins typical of integrative conjugative elements (ICE) in the class of PFGI-1 of Pseudomonas fluorescens Pf-5. Defining HMMs for this property closely follow the scope of PFL_4697 (TIGR03747), one of a number of component families that occur only in this context and can serve as a marker for the system.
JCVI RolePlasmid functions
Parent PropertyGenProp0076: DNA handling
GenProp0076: DNA handling
GenProp0076: DNA handling
Literature References
[ 1 ] Mavrodi DV, Loper JE, Paulsen IT, Thomashow LS   Mobile genetic elements in the genome of the beneficial rhizobacterium Pseudomonas fluorescens Pf-5.   BMC Microbiol. 2009 Jan 13;9:8.  PMID 19144133
[ 2 ] Beaber JW, Hochhut B, Waldor MK   Genomic and functional analyses of SXT, an integrating antibiotic resistance gene transfer element derived from Vibrio cholerae.   J Bacteriol. 2002 Aug;184(15):4259-69.  PMID 12107144
[ 1 ] Mavrodi DV, Loper JE, Paulsen IT, Thomashow LS   Mobile genetic elements in the genome of the beneficial rhizobacterium Pseudomonas fluorescens Pf-5.   BMC Microbiol. 2009 Jan 13;9:8.  PMID 19144133
[ 2 ] Beaber JW, Hochhut B, Waldor MK   Genomic and functional analyses of SXT, an integrating antibiotic resistance gene transfer element derived from Vibrio cholerae.   J Bacteriol. 2002 Aug;184(15):4259-69.  PMID 12107144
[ 1 ] Mavrodi DV, Loper JE, Paulsen IT, Thomashow LS   Mobile genetic elements in the genome of the beneficial rhizobacterium Pseudomonas fluorescens Pf-5.   BMC Microbiol. 2009 Jan 13;9:8.  PMID 19144133
[ 2 ] Beaber JW, Hochhut B, Waldor MK   Genomic and functional analyses of SXT, an integrating antibiotic resistance gene transfer element derived from Vibrio cholerae.   J Bacteriol. 2002 Aug;184(15):4259-69.  PMID 12107144

Components
Step NameStep NumRequiredEvidence (Method)Evidence Go Terms
integrating conjugative element ParB-related proteinPFL4666YESTIGR03764 (HMM): integrating conjugative element, PFGI_1 class, ParB family protein
integrating conjugative element ParB-related proteinPFL4666YESTIGR03764 (HMM): integrating conjugative element, PFGI_1 class, ParB family protein
integrating conjugative element ParB-related proteinPFL4666YESTIGR03764 (HMM): integrating conjugative element, PFGI_1 class, ParB family protein
integrating conjugative element protein, PFL_4669 familyPFL4669YESTIGR03761 (HMM): integrating conjugative element protein, PFL_4669 family
integrating conjugative element protein, PFL_4669 familyPFL4669YESTIGR03761 (HMM): integrating conjugative element protein, PFL_4669 family
integrating conjugative element protein, PFL_4669 familyPFL4669YESTIGR03761 (HMM): integrating conjugative element protein, PFL_4669 family
integrating conjugative element protein PilL, PFGI-1 classPFL4675YESTIGR03748 (HMM): integrating conjugative element protein PilL, PFGI-1 class
integrating conjugative element protein PilL, PFGI-1 classPFL4675YESTIGR03748 (HMM): integrating conjugative element protein PilL, PFGI-1 class
integrating conjugative element protein PilL, PFGI-1 classPFL4675YESTIGR03748 (HMM): integrating conjugative element protein PilL, PFGI-1 class
integrating conjugative element protein PFL4693PFL4693YESTIGR03759 (HMM): integrating conjugative element protein, PFL_4693 family
integrating conjugative element protein PFL4693PFL4693YESTIGR03759 (HMM): integrating conjugative element protein, PFL_4693 family
integrating conjugative element protein PFL4693PFL4693YESTIGR03759 (HMM): integrating conjugative element protein, PFL_4693 family
integrating conjugative element protein, PFL4695 familyPFL4695YESTIGR03765 (HMM): integrating conjugative element protein, PFL_4695 family
integrating conjugative element protein, PFL4695 familyPFL4695YESTIGR03765 (HMM): integrating conjugative element protein, PFL_4695 family
integrating conjugative element protein, PFL4695 familyPFL4695YESTIGR03765 (HMM): integrating conjugative element protein, PFL_4695 family
integrating conjugative element TraD protein, PFGI-1 classPFL4696YESTIGR03754 (HMM): conjugative coupling factor TraD, PFGI-1 class
integrating conjugative element TraD protein, PFGI-1 classPFL4696YESTIGR03754 (HMM): conjugative coupling factor TraD, PFGI-1 class
integrating conjugative element TraD protein, PFGI-1 classPFL4696YESTIGR03754 (HMM): conjugative coupling factor TraD, PFGI-1 class
integrating conjugative element membrane protein PFL4697PFL4697YESTIGR03747 (HMM): integrating conjugative element membrane protein, PFL_4697 family
integrating conjugative element membrane protein PFL4697PFL4697YESTIGR03747 (HMM): integrating conjugative element membrane protein, PFL_4697 family
integrating conjugative element membrane protein PFL4697PFL4697YESTIGR03747 (HMM): integrating conjugative element membrane protein, PFL_4697 family
integrating conjugative element protein, RAQPRD familyPFL4700YESTIGR01690 (HMM): integrative conjugative element protein, RAQPRD family
integrating conjugative element protein, RAQPRD familyPFL4700YESTIGR01690 (HMM): integrative conjugative element protein, RAQPRD family
integrating conjugative element protein, RAQPRD familyPFL4700YESTIGR01690 (HMM): integrative conjugative element protein, RAQPRD family
integrating conjugative element protein membrane PFL4701PFL4701YESTIGR03758 (HMM): integrating conjugative element protein, PFL_4701 family
integrating conjugative element protein membrane PFL4701PFL4701YESTIGR03758 (HMM): integrating conjugative element protein, PFL_4701 family
integrating conjugative element protein membrane PFL4701PFL4701YESTIGR03758 (HMM): integrating conjugative element protein, PFL_4701 family
integrating conjugative element membrane protein PFL4702PFL4702YESTIGR03745 (HMM): integrating conjugative element membrane protein, PFL_4702 family
integrating conjugative element membrane protein PFL4702PFL4702YESTIGR03745 (HMM): integrating conjugative element membrane protein, PFL_4702 family
integrating conjugative element membrane protein PFL4702PFL4702YESTIGR03745 (HMM): integrating conjugative element membrane protein, PFL_4702 family
integrating conjugative element protein, PFL4703 familyPFL4703YESTIGR03746 (HMM): integrating conjugative element protein, PFL_4703 family
integrating conjugative element protein, PFL4703 familyPFL4703YESTIGR03746 (HMM): integrating conjugative element protein, PFL_4703 family
integrating conjugative element protein, PFL4703 familyPFL4703YESTIGR03746 (HMM): integrating conjugative element protein, PFL_4703 family
integrating conjugative element protein, PFL4704 familyPFL4704YESTIGR03749 (HMM): integrating conjugative element protein, PFL_4704 family
integrating conjugative element protein, PFL4704 familyPFL4704YESTIGR03749 (HMM): integrating conjugative element protein, PFL_4704 family
integrating conjugative element protein, PFL4704 familyPFL4704YESTIGR03749 (HMM): integrating conjugative element protein, PFL_4704 family
integrating conjugative element protein, PFL4705 familyPFL4705YESTIGR03752 (HMM): integrating conjugative element protein, PFL_4705 family
integrating conjugative element protein, PFL4705 familyPFL4705YESTIGR03752 (HMM): integrating conjugative element protein, PFL_4705 family
integrating conjugative element protein, PFL4705 familyPFL4705YESTIGR03752 (HMM): integrating conjugative element protein, PFL_4705 family
conjugative transfer ATPase, PFL_4706 familyPFL4706YESTIGR03744 (HMM): conjugative transfer ATPase, PFL_4706 family
conjugative transfer ATPase, PFL_4706 familyPFL4706YESTIGR03744 (HMM): conjugative transfer ATPase, PFL_4706 family
conjugative transfer ATPase, PFL_4706 familyPFL4706YESTIGR03744 (HMM): conjugative transfer ATPase, PFL_4706 family
integrating conjugative element protein PFL4709PFL4709YESTIGR03757 (HMM): integrating conjugative element protein, PFL_4709 family
integrating conjugative element protein PFL4709PFL4709YESTIGR03757 (HMM): integrating conjugative element protein, PFL_4709 family
integrating conjugative element protein PFL4709PFL4709YESTIGR03757 (HMM): integrating conjugative element protein, PFL_4709 family
integrating conjugative element protein, PFL4710 familyPFL4710YESTIGR03756 (HMM): integrating conjugative element protein, PFL_4710 family
integrating conjugative element protein, PFL4710 familyPFL4710YESTIGR03756 (HMM): integrating conjugative element protein, PFL_4710 family
integrating conjugative element protein, PFL4710 familyPFL4710YESTIGR03756 (HMM): integrating conjugative element protein, PFL_4710 family
integrating conjugative element protein, PFL4711 familyPFL4711YESTIGR03755 (HMM): integrating conjugative element protein, PFL_4711 family
integrating conjugative element protein, PFL4711 familyPFL4711YESTIGR03755 (HMM): integrating conjugative element protein, PFL_4711 family
integrating conjugative element protein, PFL4711 familyPFL4711YESTIGR03755 (HMM): integrating conjugative element protein, PFL_4711 family
integrating conjugative element relaxase, PFGI-1 classPFL4751YESTIGR03760 (HMM): integrating conjugative element relaxase, PFGI-1 class
integrating conjugative element relaxase, PFGI-1 classPFL4751YESTIGR03760 (HMM): integrating conjugative element relaxase, PFGI-1 class
integrating conjugative element relaxase, PFGI-1 classPFL4751YESTIGR03760 (HMM): integrating conjugative element relaxase, PFGI-1 class
conjugative transfer region protein, TIGR03750p47202.1NOTIGR03750 (HMM): conjugative transfer region protein, TIGR03750 family
conjugative transfer region protein, TIGR03750p47202.1NOTIGR03750 (HMM): conjugative transfer region protein, TIGR03750 family
conjugative transfer region protein, TIGR03750p47202.1NOTIGR03750 (HMM): conjugative transfer region protein, TIGR03750 family
conjugative transfer region protein, TIGR03751 familyp47205.1NOTIGR03751 (HMM): conjugative transfer region lipoprotein, TIGR03751 family
conjugative transfer region protein, TIGR03751 familyp47205.1NOTIGR03751 (HMM): conjugative transfer region lipoprotein, TIGR03751 family
conjugative transfer region protein, TIGR03751 familyp47205.1NOTIGR03751 (HMM): conjugative transfer region lipoprotein, TIGR03751 family

Parent Properties
AccessionName
GenProp0076DNA handling
GenProp0076DNA handling
GenProp0076DNA handling


Sibling Properties
AccessionName
GenProp0018natural transformation
GenProp0056type IV pilus
GenProp0115DNA repair
GenProp0198ruvABC Holliday junction complex
GenProp0311competence-related genes
GenProp0489F-type conjugation system
GenProp0490Ti-type conjugation system
GenProp0699DNA gyrase
GenProp0851integration host factor
GenProp0858conjugative transposon, Bacteroides type