Genome Property Definition Page

AccessionGenProp0912
NameLeptospira exopolysaccharide biosynthesis clusters
TypeGUILD

Components
Step NameStep NumRequiredEvidence (Method)Evidence Go Terms
sugar activating enzymes: nucleotidyltransferases, cytidyltransferases, kinasesactivNOPF02348 (HMM-CLUST): cytidylyltransferase
PF00483 (HMM-CLUST): nucleotidyl transferase
TIGR01207 (HMM-CLUST): glucose-1-phosphate thymidylyltransferase
PF00294 (HMM-CLUST): carbohydrate kinase, pfkB family
sugar activating enzymes: nucleotidyltransferases, cytidyltransferases, kinasesactivNOPF02348 (HMM-CLUST): cytidylyltransferase
PF00483 (HMM-CLUST): nucleotidyl transferase
TIGR01207 (HMM-CLUST): glucose-1-phosphate thymidylyltransferase
PF00294 (HMM-CLUST): carbohydrate kinase, pfkB family
sugar activating enzymes: nucleotidyltransferases, cytidyltransferases, kinasesactivNOPF02348 (HMM-CLUST): cytidylyltransferase
PF00483 (HMM-CLUST): nucleotidyl transferase
TIGR01207 (HMM-CLUST): glucose-1-phosphate thymidylyltransferase
PF00294 (HMM-CLUST): carbohydrate kinase, pfkB family
glycosyltransferasesglyctrYESPF00535 (HMM-CLUST): glycosyltransferase, group 2 family
PF00534 (HMM-CLUST): glycosyltransferase, group 1 family
glycosyltransferasesglyctrYESPF00535 (HMM-CLUST): glycosyltransferase, group 2 family
PF00534 (HMM-CLUST): glycosyltransferase, group 1 family
glycosyltransferasesglyctrYESPF00535 (HMM-CLUST): glycosyltransferase, group 2 family
PF00534 (HMM-CLUST): glycosyltransferase, group 1 family
sugar isomerizatation and epimerization enzymesisomNOTIGR00236 (HMM-CLUST): UDP-N-acetylglucosamine 2-epimerase
PF05523 (HMM-CLUST): WxcM-like, C-terminal
TIGR01221 (HMM-CLUST): dTDP-4-dehydrorhamnose 3,5-epimerase
PF02350 (HMM-CLUST): UDP-N-acetylglucosamine 2-epimerase
PF03275 (HMM-CLUST): UDP-galactopyranose mutase
sugar isomerizatation and epimerization enzymesisomNOTIGR00236 (HMM-CLUST): UDP-N-acetylglucosamine 2-epimerase
PF05523 (HMM-CLUST): WxcM-like, C-terminal
TIGR01221 (HMM-CLUST): dTDP-4-dehydrorhamnose 3,5-epimerase
PF02350 (HMM-CLUST): UDP-N-acetylglucosamine 2-epimerase
PF03275 (HMM-CLUST): UDP-galactopyranose mutase
sugar isomerizatation and epimerization enzymesisomNOTIGR00236 (HMM-CLUST): UDP-N-acetylglucosamine 2-epimerase
PF05523 (HMM-CLUST): WxcM-like, C-terminal
TIGR01221 (HMM-CLUST): dTDP-4-dehydrorhamnose 3,5-epimerase
PF02350 (HMM-CLUST): UDP-N-acetylglucosamine 2-epimerase
PF03275 (HMM-CLUST): UDP-galactopyranose mutase
sugar ring modification enzymes: synthases, lyases, aldolases, lactonasesmodifNOPF03102 (HMM-CLUST): NeuB family
PF03328 (HMM-CLUST): HpcH/HpaI aldolase/citrate lyase family
TIGR01198 (HMM-CLUST): 6-phosphogluconolactonase
PF04055 (HMM-CLUST): radical SAM family
sugar ring modification enzymes: synthases, lyases, aldolases, lactonasesmodifNOPF03102 (HMM-CLUST): NeuB family
PF03328 (HMM-CLUST): HpcH/HpaI aldolase/citrate lyase family
TIGR01198 (HMM-CLUST): 6-phosphogluconolactonase
PF04055 (HMM-CLUST): radical SAM family
sugar ring modification enzymes: synthases, lyases, aldolases, lactonasesmodifNOPF03102 (HMM-CLUST): NeuB family
PF03328 (HMM-CLUST): HpcH/HpaI aldolase/citrate lyase family
TIGR01198 (HMM-CLUST): 6-phosphogluconolactonase
PF04055 (HMM-CLUST): radical SAM family
other known EPS enzymes (from synteny)otherNOPF08889 (HMM-CLUST): WbqC-like protein family
other known EPS enzymes (from synteny)otherNOPF08889 (HMM-CLUST): WbqC-like protein family
other known EPS enzymes (from synteny)otherNOPF08889 (HMM-CLUST): WbqC-like protein family
EPS biosynthesis priming polyprenyl glycosylphosphotransferaseprimeYESTIGR03025 (HMM): exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase
EPS biosynthesis priming polyprenyl glycosylphosphotransferaseprimeYESTIGR03025 (HMM): exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase
EPS biosynthesis priming polyprenyl glycosylphosphotransferaseprimeYESTIGR03025 (HMM): exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase
sugar redox enzymes: dehydrogenases, epimerase/dehydratases, oxidases, reductasesredoxNOPF01370 (HMM-CLUST): NAD dependent epimerase/dehydratase family
PF00465 (HMM-CLUST): alcohol dehydrogenase, iron-containing
PF00107 (HMM-CLUST): oxidoreductase, zinc-binding dehydrogenase family
PF01408 (HMM-CLUST): oxidoreductase family, NAD-binding Rossmann fold
PF00106 (HMM-CLUST): oxidoreductase, short chain dehydrogenase/reductase family
PF00248 (HMM-CLUST): oxidoreductase, aldo/keto reductase family
PF00389 (HMM-CLUST): D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
PF01370 (HMM-CLUST): NAD dependent epimerase/dehydratase family
PF01266 (HMM-CLUST): FAD dependent oxidoreductase
sugar redox enzymes: dehydrogenases, epimerase/dehydratases, oxidases, reductasesredoxNOPF01370 (HMM-CLUST): NAD dependent epimerase/dehydratase family
PF00465 (HMM-CLUST): alcohol dehydrogenase, iron-containing
PF00107 (HMM-CLUST): oxidoreductase, zinc-binding dehydrogenase family
PF01408 (HMM-CLUST): oxidoreductase family, NAD-binding Rossmann fold
PF00106 (HMM-CLUST): oxidoreductase, short chain dehydrogenase/reductase family
PF00248 (HMM-CLUST): oxidoreductase, aldo/keto reductase family
PF00389 (HMM-CLUST): D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
PF01370 (HMM-CLUST): NAD dependent epimerase/dehydratase family
PF01266 (HMM-CLUST): FAD dependent oxidoreductase
sugar redox enzymes: dehydrogenases, epimerase/dehydratases, oxidases, reductasesredoxNOPF01370 (HMM-CLUST): NAD dependent epimerase/dehydratase family
PF00465 (HMM-CLUST): alcohol dehydrogenase, iron-containing
PF00107 (HMM-CLUST): oxidoreductase, zinc-binding dehydrogenase family
PF01408 (HMM-CLUST): oxidoreductase family, NAD-binding Rossmann fold
PF00106 (HMM-CLUST): oxidoreductase, short chain dehydrogenase/reductase family
PF00248 (HMM-CLUST): oxidoreductase, aldo/keto reductase family
PF00389 (HMM-CLUST): D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
PF01370 (HMM-CLUST): NAD dependent epimerase/dehydratase family
PF01266 (HMM-CLUST): FAD dependent oxidoreductase
transcriptional activatorsregulNOMarR (PF01047) clustered (MANUAL)
transcriptional activatorsregulNOMarR (PF01047) clustered (MANUAL)
transcriptional activatorsregulNOMarR (PF01047) clustered (MANUAL)
sugar-associated domain of unknown functionsugDUFNOPF01380 (HMM-CLUST): SIS domain
sugar-associated domain of unknown functionsugDUFNOPF01380 (HMM-CLUST): SIS domain
sugar-associated domain of unknown functionsugDUFNOPF01380 (HMM-CLUST): SIS domain
sugar modification transferases: amino-, carbamoyl-, acetyl-, methyl-, amido-transfNOPF02543 (HMM-CLUST): carbamoyltransferase
PF01041 (HMM-CLUST): DegT/DnrJ/EryC1/StrS aminotransferase family
PF08241 (HMM-CLUST): methyltransferase domain
TIGR01444 (HMM-CLUST): methyltransferase, FkbM family
TIGR03573 (HMM-CLUST): N-acetyl sugar amidotransferase
TIGR01855 (HMM-CLUST): imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
TIGR03572 (HMM-CLUST): glycosyl amidation-associated protein WbuZ
PF00202 (HMM-CLUST): aminotransferase, class III
PF00583 (HMM-CLUST): acetyltransferase, GNAT family
PF02388 (HMM-CLUST): FemAB family
PF08242 (HMM-CLUST): methyltransferase domain
PF00551 (HMM-CLUST): formyl transferase domain protein
sugar modification transferases: amino-, carbamoyl-, acetyl-, methyl-, amido-transfNOPF02543 (HMM-CLUST): carbamoyltransferase
PF01041 (HMM-CLUST): DegT/DnrJ/EryC1/StrS aminotransferase family
PF08241 (HMM-CLUST): methyltransferase domain
TIGR01444 (HMM-CLUST): methyltransferase, FkbM family
TIGR03573 (HMM-CLUST): N-acetyl sugar amidotransferase
TIGR01855 (HMM-CLUST): imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
TIGR03572 (HMM-CLUST): glycosyl amidation-associated protein WbuZ
PF00202 (HMM-CLUST): aminotransferase, class III
PF00583 (HMM-CLUST): acetyltransferase, GNAT family
PF02388 (HMM-CLUST): FemAB family
PF08242 (HMM-CLUST): methyltransferase domain
PF00551 (HMM-CLUST): formyl transferase domain protein
sugar modification transferases: amino-, carbamoyl-, acetyl-, methyl-, amido-transfNOPF02543 (HMM-CLUST): carbamoyltransferase
PF01041 (HMM-CLUST): DegT/DnrJ/EryC1/StrS aminotransferase family
PF08241 (HMM-CLUST): methyltransferase domain
TIGR01444 (HMM-CLUST): methyltransferase, FkbM family
TIGR03573 (HMM-CLUST): N-acetyl sugar amidotransferase
TIGR01855 (HMM-CLUST): imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
TIGR03572 (HMM-CLUST): glycosyl amidation-associated protein WbuZ
PF00202 (HMM-CLUST): aminotransferase, class III
PF00583 (HMM-CLUST): acetyltransferase, GNAT family
PF02388 (HMM-CLUST): FemAB family
PF08242 (HMM-CLUST): methyltransferase domain
PF00551 (HMM-CLUST): formyl transferase domain protein
sugar trimming enzymes: phosphatases, deacetylases, esterasestrimNOPF00459 (HMM-CLUST): inositol monophosphatase family
PF01522 (HMM-CLUST): polysaccharide deacetylase
PF02585 (HMM-CLUST): N-acetylglucosaminylphosphatidylinositol deacetylase
sugar trimming enzymes: phosphatases, deacetylases, esterasestrimNOPF00459 (HMM-CLUST): inositol monophosphatase family
PF01522 (HMM-CLUST): polysaccharide deacetylase
PF02585 (HMM-CLUST): N-acetylglucosaminylphosphatidylinositol deacetylase
sugar trimming enzymes: phosphatases, deacetylases, esterasestrimNOPF00459 (HMM-CLUST): inositol monophosphatase family
PF01522 (HMM-CLUST): polysaccharide deacetylase
PF02585 (HMM-CLUST): N-acetylglucosaminylphosphatidylinositol deacetylase
transposasestspsaseNOPF01548 (HMM-CLUST): transposase
transposasestspsaseNOPF01548 (HMM-CLUST): transposase
transposasestspsaseNOPF01548 (HMM-CLUST): transposase
EPS biosynthesis wzx/wzy/wzz systemwz-xyzYESPF02706 (HMM): chain length determinant protein
PF01943 (HMM): polysaccharide biosynthesis protein
EPS biosynthesis wzx/wzy/wzz systemwz-xyzYESPF02706 (HMM): chain length determinant protein
PF01943 (HMM): polysaccharide biosynthesis protein
EPS biosynthesis wzx/wzy/wzz systemwz-xyzYESPF02706 (HMM): chain length determinant protein
PF01943 (HMM): polysaccharide biosynthesis protein