Genome Property Definition Page

AccessionGenProp0925
NameLeptospira core LPS elements
TypeMETAPATH
DescriptionThese components of Leptospira Lipopolysaccharide are shared among all analyzed Leptospira serovars. Currently, this includes only L. interrogans (Lai str. 56601, ntli02 and Copenageni str. Fiocruz, ntli03), borgpetersenii (Hardjo-Bovis L550, ntlb02 and JB1976m ntlb03), and biflexa Patoc 1 (Paris, ntlb05 and Ames, ntlb06).
Parent PropertyGenProp0297: lipopolysaccharide biosynthesis
GenProp0297: lipopolysaccharide biosynthesis
GenProp0297: lipopolysaccharide biosynthesis

Components
Step NameStep NumRequiredEvidence (Method)Evidence Go Terms
Lipid A 4(prime) phosphatase4-PpaseNO
Lipid A 4(prime) phosphatase4-PpaseNO
Lipid A 4(prime) phosphatase4-PpaseNO
NAD dependent epimerase/dehydratase, LLPSF_EDH_00002 familyEDH0002YES2777 (RULE_BASE)

2777 (RULE_BASE)

2777 (RULE_BASE)

2777 (RULE_BASE)

2777 (RULE_BASE)

2777 (RULE_BASE)
NAD dependent epimerase/dehydratase, LLPSF_EDH_00002 familyEDH0002YES2777 (RULE_BASE)

2777 (RULE_BASE)

2777 (RULE_BASE)

2777 (RULE_BASE)

2777 (RULE_BASE)

2777 (RULE_BASE)
NAD dependent epimerase/dehydratase, LLPSF_EDH_00002 familyEDH0002YES2777 (RULE_BASE)

2777 (RULE_BASE)

2777 (RULE_BASE)

2777 (RULE_BASE)

2777 (RULE_BASE)

2777 (RULE_BASE)
UDP-GlcNAc3N biosynthesis from UDP-GlcNAc (GnnAB)GlcNAc3NYESGenProp0924 (GENPROP):
GenProp0924 (GENPROP):
GenProp0924 (GENPROP):
UDP-GlcNAc3N biosynthesis from UDP-GlcNAc (GnnAB)GlcNAc3NYESGenProp0924 (GENPROP):
GenProp0924 (GENPROP):
GenProp0924 (GENPROP):
UDP-GlcNAc3N biosynthesis from UDP-GlcNAc (GnnAB)GlcNAc3NYESGenProp0924 (GENPROP):
GenProp0924 (GENPROP):
GenProp0924 (GENPROP):
KDO2-Lipid A biosynthesis, basic elementsKDOLipAYESGenProp0204 (GENPROP): KDO(2)-lipid A (Re LPS) biosynthesis and delivery
GenProp0204 (GENPROP): KDO(2)-lipid A (Re LPS) biosynthesis and delivery
GenProp0204 (GENPROP): KDO(2)-lipid A (Re LPS) biosynthesis and delivery
KDO2-Lipid A biosynthesis, basic elementsKDOLipAYESGenProp0204 (GENPROP): KDO(2)-lipid A (Re LPS) biosynthesis and delivery
GenProp0204 (GENPROP): KDO(2)-lipid A (Re LPS) biosynthesis and delivery
GenProp0204 (GENPROP): KDO(2)-lipid A (Re LPS) biosynthesis and delivery
KDO2-Lipid A biosynthesis, basic elementsKDOLipAYESGenProp0204 (GENPROP): KDO(2)-lipid A (Re LPS) biosynthesis and delivery
GenProp0204 (GENPROP): KDO(2)-lipid A (Re LPS) biosynthesis and delivery
GenProp0204 (GENPROP): KDO(2)-lipid A (Re LPS) biosynthesis and delivery
Lipid-A 1-methyltransferase (O-methylphosphate-forming)LmtAYES2800 (RULE_BASE)

2800 (RULE_BASE)

2800 (RULE_BASE)
Lipid-A 1-methyltransferase (O-methylphosphate-forming)LmtAYES2800 (RULE_BASE)

2800 (RULE_BASE)

2800 (RULE_BASE)
Lipid-A 1-methyltransferase (O-methylphosphate-forming)LmtAYES2800 (RULE_BASE)

2800 (RULE_BASE)

2800 (RULE_BASE)
MarR-like transcriptional regulator, LLPSF_REG_00001 familyREG0001YESTIGR04176 (HMM): EPS-associated transcriptional regulator, MarR family
TIGR04176 (HMM): EPS-associated transcriptional regulator, MarR family
TIGR04176 (HMM): EPS-associated transcriptional regulator, MarR family
MarR-like transcriptional regulator, LLPSF_REG_00001 familyREG0001YESTIGR04176 (HMM): EPS-associated transcriptional regulator, MarR family
TIGR04176 (HMM): EPS-associated transcriptional regulator, MarR family
TIGR04176 (HMM): EPS-associated transcriptional regulator, MarR family
MarR-like transcriptional regulator, LLPSF_REG_00001 familyREG0001YESTIGR04176 (HMM): EPS-associated transcriptional regulator, MarR family
TIGR04176 (HMM): EPS-associated transcriptional regulator, MarR family
TIGR04176 (HMM): EPS-associated transcriptional regulator, MarR family
UDP-GlcNAc biosynthesisUGlcNAcYESGenProp0750 (GENPROP): UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate
GenProp0750 (GENPROP): UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate
GenProp0750 (GENPROP): UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate
UDP-GlcNAc biosynthesisUGlcNAcYESGenProp0750 (GENPROP): UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate
GenProp0750 (GENPROP): UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate
GenProp0750 (GENPROP): UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate
UDP-GlcNAc biosynthesisUGlcNAcYESGenProp0750 (GENPROP): UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate
GenProp0750 (GENPROP): UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate
GenProp0750 (GENPROP): UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate

Parent Properties
AccessionName
GenProp0297lipopolysaccharide biosynthesis
GenProp0297lipopolysaccharide biosynthesis
GenProp0297lipopolysaccharide biosynthesis


Sibling Properties
AccessionName
GenProp0203LPS inner core biosynthesis, ketodeoxyoctonate and heptose type
GenProp0204KDO(2)-lipid A (Re LPS) biosynthesis and delivery
GenProp0929LPS outer core, E. coli type
GenProp0966E. coli O-antigen biosynthesis
GenProp0994Leptospira interrogans-specific LPS components
GenProp0995Leptospira interrogans LPS associated transketolase