Genome Property Definition Page

AccessionGenProp0959
Nameradical SAM/uncharacterized protein TIGR04002 system
TypeSYSTEM
DescriptionThe partner protein belongs to a family in which characterized members are the substrate specificity-conferring (often interchangeable) module of energy coupling factor (ECF)-type transporters. Two ATP-binding cassette proteins and the T component (see PF02361) provide the rest of the transport system. The radical SAM protein is uncharacterized but is likely to modify what the ECF system imports.
Parent PropertyGenProp0475: Unknown biological process
GenProp0475: Unknown biological process
GenProp0475: Unknown biological process
Literature References
[ 1 ]Rodionov DA, Hebbeln P, Eudes A, ter Beek J, Rodionova IA, Erkens GB, Slotboom DJ, Gelfand MS, Osterman AL, Hanson AD, Eitinger T  A novel class of modular transporters for vitamins in prokaryotes.  J Bacteriol. 2009 Jan;191(1):42-51. doi: 10.1128/JB.01208-08.  PMID 18931129
[ 1 ]Rodionov DA, Hebbeln P, Eudes A, ter Beek J, Rodionova IA, Erkens GB, Slotboom DJ, Gelfand MS, Osterman AL, Hanson AD, Eitinger T  A novel class of modular transporters for vitamins in prokaryotes.  J Bacteriol. 2009 Jan;191(1):42-51. doi: 10.1128/JB.01208-08.  PMID 18931129
[ 1 ]Rodionov DA, Hebbeln P, Eudes A, ter Beek J, Rodionova IA, Erkens GB, Slotboom DJ, Gelfand MS, Osterman AL, Hanson AD, Eitinger T  A novel class of modular transporters for vitamins in prokaryotes.  J Bacteriol. 2009 Jan;191(1):42-51. doi: 10.1128/JB.01208-08.  PMID 18931129

Components
Step NameStep NumRequiredEvidence (Method)Evidence Go Terms
ECF transport S componentpartnerYESTIGR04002 (HMM): TIGR04002 family protein
TIGR04002 (HMM): TIGR04002 family protein
TIGR04002 (HMM): TIGR04002 family protein
ECF transport S componentpartnerYESTIGR04002 (HMM): TIGR04002 family protein
TIGR04002 (HMM): TIGR04002 family protein
TIGR04002 (HMM): TIGR04002 family protein
ECF transport S componentpartnerYESTIGR04002 (HMM): TIGR04002 family protein
TIGR04002 (HMM): TIGR04002 family protein
TIGR04002 (HMM): TIGR04002 family protein
uncharacterized radical SAM proteinrSAMYESTIGR04100 (HMM): radical SAM enzyme, TIGR04100 family
TIGR04100 (HMM): radical SAM enzyme, TIGR04100 family
TIGR04100 (HMM): radical SAM enzyme, TIGR04100 family
uncharacterized radical SAM proteinrSAMYESTIGR04100 (HMM): radical SAM enzyme, TIGR04100 family
TIGR04100 (HMM): radical SAM enzyme, TIGR04100 family
TIGR04100 (HMM): radical SAM enzyme, TIGR04100 family
uncharacterized radical SAM proteinrSAMYESTIGR04100 (HMM): radical SAM enzyme, TIGR04100 family
TIGR04100 (HMM): radical SAM enzyme, TIGR04100 family
TIGR04100 (HMM): radical SAM enzyme, TIGR04100 family

Parent Properties
AccessionName
GenProp0475Unknown biological process
GenProp0475Unknown biological process
GenProp0475Unknown biological process


Sibling Properties
AccessionName
GenProp0470sporadically distributed four-gene operon
GenProp0471uncharacterized gene pair TIGR02683/TIGR02684
GenProp0472uncharacterized gene pair TIGR02687/TIGR02688
GenProp0627gene pair involved in iron and oxygen metabolism
GenProp0665peptide chain release operon, RctB-like/PrfH
GenProp0751Acidobacterial ADOP/PadR gene pairs
GenProp0790sporadic pair TIGR03545/TIGR03546
GenProp0798Enterococcus/Aeromonas extended locus
GenProp0830integral membrane mystery pair
GenProp0854ParB-rel/ThiF-rel cassette PRTRC
GenProp0868uncharacterized protein pair with twin-arg and repeat
GenProp0894Actinobacterial uncharacterized trio
GenProp0916radical SAM/uncharacterized protein TIGR03936 system
GenProp0940metallo-mystery pair
GenProp0965YedE/YedF selenium handling system
GenProp1063Memo/AMMECR1/rSAM family trio system
GenProp1066uncharacterized cassette GAK (Grasp, Amphipathic, Kinase)
GenProp1086Firmicutes/Treponema mobile radical SAM system