Genome Property Definition Page

AccessionGenProp0994
NameLeptospira interrogans-specific LPS components
TypeGUILD
DescriptionThese families of genes are observed in the LPS biosynthesis locus of Leptospira interrogans strains, but not in other Leptospira species such as L. borgpetersenii or L. biflexa.
JCVI RoleBiosynthesis and degradation of surface polysaccharides and lipopolysaccharides
Parent PropertyGenProp0297: lipopolysaccharide biosynthesis
GenProp0297: lipopolysaccharide biosynthesis
GenProp0297: lipopolysaccharide biosynthesis

Components
Step NameStep NumRequiredEvidence (Method)Evidence Go Terms
putative sugar acetyltransferase, LLPSF_ACT_00022 familyACT0022YES2799 (RULE_BASE)

2799 (RULE_BASE)
putative sugar acetyltransferase, LLPSF_ACT_00022 familyACT0022YES2799 (RULE_BASE)

2799 (RULE_BASE)
putative sugar acetyltransferase, LLPSF_ACT_00022 familyACT0022YES2799 (RULE_BASE)

2799 (RULE_BASE)
transketolase, LLPSF_CCT_00010 and _00011 subunitsCCT0010YESGenProp0995 (GENPROP): Leptospira interrogans LPS associated transketolase
GenProp0995 (GENPROP): Leptospira interrogans LPS associated transketolase
transketolase, LLPSF_CCT_00010 and _00011 subunitsCCT0010YESGenProp0995 (GENPROP): Leptospira interrogans LPS associated transketolase
GenProp0995 (GENPROP): Leptospira interrogans LPS associated transketolase
transketolase, LLPSF_CCT_00010 and _00011 subunitsCCT0010YESGenProp0995 (GENPROP): Leptospira interrogans LPS associated transketolase
GenProp0995 (GENPROP): Leptospira interrogans LPS associated transketolase
Sugar biosynthesis cassette 2CSSTE_2YESGenProp0997 (GENPROP): proposed nine-carbon sugar biosynthesis cassette
GenProp0997 (GENPROP): proposed nine-carbon sugar biosynthesis cassette
Sugar biosynthesis cassette 2CSSTE_2YESGenProp0997 (GENPROP): proposed nine-carbon sugar biosynthesis cassette
GenProp0997 (GENPROP): proposed nine-carbon sugar biosynthesis cassette
Sugar biosynthesis cassette 2CSSTE_2YESGenProp0997 (GENPROP): proposed nine-carbon sugar biosynthesis cassette
GenProp0997 (GENPROP): proposed nine-carbon sugar biosynthesis cassette
NAD dependent epimerase/dehydratase, LLPSF_EDH_00005 familyEDH0005YES2781 (RULE_BASE)

2781 (RULE_BASE)
NAD dependent epimerase/dehydratase, LLPSF_EDH_00005 familyEDH0005YES2781 (RULE_BASE)

2781 (RULE_BASE)
NAD dependent epimerase/dehydratase, LLPSF_EDH_00005 familyEDH0005YES2781 (RULE_BASE)

2781 (RULE_BASE)
NAD dependent epimerase/dehydratase, LLPSF_EDH_00008EDH0008YES2785 (RULE_BASE)

2785 (RULE_BASE)
NAD dependent epimerase/dehydratase, LLPSF_EDH_00008EDH0008YES2785 (RULE_BASE)

2785 (RULE_BASE)
NAD dependent epimerase/dehydratase, LLPSF_EDH_00008EDH0008YES2785 (RULE_BASE)

2785 (RULE_BASE)
NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 familyEDH0030YES2811 (RULE_BASE)

2811 (RULE_BASE)
NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 familyEDH0030YES2811 (RULE_BASE)

2811 (RULE_BASE)
NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 familyEDH0030YES2811 (RULE_BASE)

2811 (RULE_BASE)
formyl transferase, LLPSF_FMT_00020 familyFMT0020YES2797 (RULE_BASE)

2797 (RULE_BASE)
formyl transferase, LLPSF_FMT_00020 familyFMT0020YES2797 (RULE_BASE)

2797 (RULE_BASE)
formyl transferase, LLPSF_FMT_00020 familyFMT0020YES2797 (RULE_BASE)

2797 (RULE_BASE)
glycosyltransferase, group 2 family, LLPSF_GLT_0027 familyGLT0027YES2806 (RULE_BASE)

2806 (RULE_BASE)
glycosyltransferase, group 2 family, LLPSF_GLT_0027 familyGLT0027YES2806 (RULE_BASE)

2806 (RULE_BASE)
glycosyltransferase, group 2 family, LLPSF_GLT_0027 familyGLT0027YES2806 (RULE_BASE)

2806 (RULE_BASE)
putative sugar isomerase, LLPSF_ISO_00004 familyISO0004YES2780 (RULE_BASE)

2780 (RULE_BASE)
putative sugar isomerase, LLPSF_ISO_00004 familyISO0004YES2780 (RULE_BASE)

2780 (RULE_BASE)
putative sugar isomerase, LLPSF_ISO_00004 familyISO0004YES2780 (RULE_BASE)

2780 (RULE_BASE)
WxcM-like protein, LLPSF_ISO_0025 familyISO0025YES2803 (RULE_BASE)

2803 (RULE_BASE)
WxcM-like protein, LLPSF_ISO_0025 familyISO0025YES2803 (RULE_BASE)

2803 (RULE_BASE)
WxcM-like protein, LLPSF_ISO_0025 familyISO0025YES2803 (RULE_BASE)

2803 (RULE_BASE)
methyltransferase domain protein, LLPSF_MET_00015 familyMET0015YES2792 (RULE_BASE)

2792 (RULE_BASE)
methyltransferase domain protein, LLPSF_MET_00015 familyMET0015YES2792 (RULE_BASE)

2792 (RULE_BASE)
methyltransferase domain protein, LLPSF_MET_00015 familyMET0015YES2792 (RULE_BASE)

2792 (RULE_BASE)
methyltransferase domain protein, LLPSF_MET_00016 familyMET0016YES2793 (RULE_BASE)

2793 (RULE_BASE)
methyltransferase domain protein, LLPSF_MET_00016 familyMET0016YES2793 (RULE_BASE)

2793 (RULE_BASE)
methyltransferase domain protein, LLPSF_MET_00016 familyMET0016YES2793 (RULE_BASE)

2793 (RULE_BASE)
methyltransferase domain protein, LLPSF_MET_00018 familyMET0018YES2795 (RULE_BASE)

2795 (RULE_BASE)
methyltransferase domain protein, LLPSF_MET_00018 familyMET0018YES2795 (RULE_BASE)

2795 (RULE_BASE)
methyltransferase domain protein, LLPSF_MET_00018 familyMET0018YES2795 (RULE_BASE)

2795 (RULE_BASE)
methyltransferase domain protein, LLPSF_MET_00026 familyMET0026YES2805 (RULE_BASE)

2805 (RULE_BASE)
methyltransferase domain protein, LLPSF_MET_00026 familyMET0026YES2805 (RULE_BASE)

2805 (RULE_BASE)
methyltransferase domain protein, LLPSF_MET_00026 familyMET0026YES2805 (RULE_BASE)

2805 (RULE_BASE)
nucleotidyl transferase, LLPSF_NCT_00006 familyNCT0006YES2782 (RULE_BASE)

2782 (RULE_BASE)
nucleotidyl transferase, LLPSF_NCT_00006 familyNCT0006YES2782 (RULE_BASE)

2782 (RULE_BASE)
nucleotidyl transferase, LLPSF_NCT_00006 familyNCT0006YES2782 (RULE_BASE)

2782 (RULE_BASE)
nucleotidyltransferase/carbohydrate kinase, LLPSF_NCT_00007 familyNCT0007YES2783 (RULE_BASE)

2783 (RULE_BASE)
nucleotidyltransferase/carbohydrate kinase, LLPSF_NCT_00007 familyNCT0007YES2783 (RULE_BASE)

2783 (RULE_BASE)
nucleotidyltransferase/carbohydrate kinase, LLPSF_NCT_00007 familyNCT0007YES2783 (RULE_BASE)

2783 (RULE_BASE)
DegT/DnrJ/EryC1/StrS aminotransferase family protein, LLPS_NHT_00019 familyNHT0019YES2796 (RULE_BASE)

2796 (RULE_BASE)
DegT/DnrJ/EryC1/StrS aminotransferase family protein, LLPS_NHT_00019 familyNHT0019YES2796 (RULE_BASE)

2796 (RULE_BASE)
DegT/DnrJ/EryC1/StrS aminotransferase family protein, LLPS_NHT_00019 familyNHT0019YES2796 (RULE_BASE)

2796 (RULE_BASE)
FAD dependent oxidoreductase, LLPSF_OXR_00003 familyOXR0003YES2779 (RULE_BASE)

2779 (RULE_BASE)
FAD dependent oxidoreductase, LLPSF_OXR_00003 familyOXR0003YES2779 (RULE_BASE)

2779 (RULE_BASE)
FAD dependent oxidoreductase, LLPSF_OXR_00003 familyOXR0003YES2779 (RULE_BASE)

2779 (RULE_BASE)
hydrolase, NUDIX family, LLPSF_PHH_00014 familyPHH0014YES2791 (RULE_BASE)

2791 (RULE_BASE)
hydrolase, NUDIX family, LLPSF_PHH_00014 familyPHH0014YES2791 (RULE_BASE)

2791 (RULE_BASE)
hydrolase, NUDIX family, LLPSF_PHH_00014 familyPHH0014YES2791 (RULE_BASE)

2791 (RULE_BASE)
nucleotidyltransferase/carbohydrate kinase, LLPSF_PHT_00007 familyPHT0007YES2783 (RULE_BASE)

2783 (RULE_BASE)
nucleotidyltransferase/carbohydrate kinase, LLPSF_PHT_00007 familyPHT0007YES2783 (RULE_BASE)

2783 (RULE_BASE)
nucleotidyltransferase/carbohydrate kinase, LLPSF_PHT_00007 familyPHT0007YES2783 (RULE_BASE)

2783 (RULE_BASE)
putative phosphotransferase, LLPSF_PHT_00009 familyPHT0009YES2786 (RULE_BASE)

2786 (RULE_BASE)
putative phosphotransferase, LLPSF_PHT_00009 familyPHT0009YES2786 (RULE_BASE)

2786 (RULE_BASE)
putative phosphotransferase, LLPSF_PHT_00009 familyPHT0009YES2786 (RULE_BASE)

2786 (RULE_BASE)
ABC transporter, ATP-binding/permease protein, LLPSF_TSP_0024 familyTSP0024YES2802 (RULE_BASE)

2802 (RULE_BASE)
ABC transporter, ATP-binding/permease protein, LLPSF_TSP_0024 familyTSP0024YES2802 (RULE_BASE)

2802 (RULE_BASE)
ABC transporter, ATP-binding/permease protein, LLPSF_TSP_0024 familyTSP0024YES2802 (RULE_BASE)

2802 (RULE_BASE)
putative lipopolysaccharide biosynthesis protein, LLPSF_UNK_00012 familyUNK0012YES2789 (RULE_BASE)

2789 (RULE_BASE)
putative lipopolysaccharide biosynthesis protein, LLPSF_UNK_00012 familyUNK0012YES2789 (RULE_BASE)

2789 (RULE_BASE)
putative lipopolysaccharide biosynthesis protein, LLPSF_UNK_00012 familyUNK0012YES2789 (RULE_BASE)

2789 (RULE_BASE)
putative lipopolysaccharide biosynthesis protein, LLPSF_UNK_00013 familyUNK0013YES2790 (RULE_BASE)

2790 (RULE_BASE)
putative lipopolysaccharide biosynthesis protein, LLPSF_UNK_00013 familyUNK0013YES2790 (RULE_BASE)

2790 (RULE_BASE)
putative lipopolysaccharide biosynthesis protein, LLPSF_UNK_00013 familyUNK0013YES2790 (RULE_BASE)

2790 (RULE_BASE)
putative lipopolysaccharide biosynthesis protein, LLPSF_UNK_00017 familyUNK0017YES2794 (RULE_BASE)

2794 (RULE_BASE)
putative lipopolysaccharide biosynthesis protein, LLPSF_UNK_00017 familyUNK0017YES2794 (RULE_BASE)

2794 (RULE_BASE)
putative lipopolysaccharide biosynthesis protein, LLPSF_UNK_00017 familyUNK0017YES2794 (RULE_BASE)

2794 (RULE_BASE)
putative lipopolysaccharide biosynthesis protein, LLPSF_UNK_00021 familyUNK0021YES2798 (RULE_BASE)

2798 (RULE_BASE)
putative lipopolysaccharide biosynthesis protein, LLPSF_UNK_00021 familyUNK0021YES2798 (RULE_BASE)

2798 (RULE_BASE)
putative lipopolysaccharide biosynthesis protein, LLPSF_UNK_00021 familyUNK0021YES2798 (RULE_BASE)

2798 (RULE_BASE)
putative lipopolysaccharide biosynthesis protein, LLPSF_UNK_00023 familyUNK0023YES2801 (RULE_BASE)

2801 (RULE_BASE)
putative lipopolysaccharide biosynthesis protein, LLPSF_UNK_00023 familyUNK0023YES2801 (RULE_BASE)

2801 (RULE_BASE)
putative lipopolysaccharide biosynthesis protein, LLPSF_UNK_00023 familyUNK0023YES2801 (RULE_BASE)

2801 (RULE_BASE)
putative lipopolysaccharide biosynthesis protein, LLPSF_UNK_00028 familyUNK0028YES2808 (RULE_BASE)

2808 (RULE_BASE)
putative lipopolysaccharide biosynthesis protein, LLPSF_UNK_00028 familyUNK0028YES2808 (RULE_BASE)

2808 (RULE_BASE)
putative lipopolysaccharide biosynthesis protein, LLPSF_UNK_00028 familyUNK0028YES2808 (RULE_BASE)

2808 (RULE_BASE)

Parent Properties
AccessionName
GenProp0297lipopolysaccharide biosynthesis
GenProp0297lipopolysaccharide biosynthesis
GenProp0297lipopolysaccharide biosynthesis


Sibling Properties
AccessionName
GenProp0203LPS inner core biosynthesis, ketodeoxyoctonate and heptose type
GenProp0204KDO(2)-lipid A (Re LPS) biosynthesis and delivery
GenProp0925Leptospira core LPS elements
GenProp0929LPS outer core, E. coli type
GenProp0966E. coli O-antigen biosynthesis
GenProp0995Leptospira interrogans LPS associated transketolase