Genome Property Definition Page

Accession	GenProp1012
Name	influenzae A virus protein set
Type	SYSTEM
Description	Segment 1 has PB2. Segment 2 has PB1 and PB1-F2 (overlapped). Segment 3 has PA. Segment 4 has hemagglutinin. Segment 5 has nucleocapsid. Segment 6 has neuraminidase. Segment 7 has M1 and M2. Segment 8 has NS2 and NS1.

Components

Step Name	Step Num	Required	Evidence (Method)
nonstructural protein PB1-F2	f_PB1F2	YES	PF11986 (HMM): influenza A proapoptotic protein
matrix protein 1	flu_M1	YES	PF00598 (HMM): influenza matrix protein
matrix protein 2	flu_M2	YES	PF00599 (HMM): influenza matrix protein
neuraminidase	flu_NA	YES	PF00064 (HMM): neuraminidase
nucleocapsid	flu_NP	YES	PF00506 (HMM): influenza virus nucleoprotein
nonstructural protein 1	flu_NS1	YES	PF00600 (HMM): influenza non-structural protein
nuclear export protein	flu_NS2	YES	PF00601 (HMM): influenza non-structural protein
RNA-dependent RNA polymerase subunit PA	flu_PA	YES	PF00603 (HMM): influenza RNA-dependent RNA polymerase subunit PA
RNA-dependent RNA polymerase subunit PB1	flu_PB1	YES	PF00602 (HMM): influenza RNA-dependent RNA polymerase subunit PB1
influenza RNA-dependent RNA polymerase subunit PB2	flu_PB2	YES	PF00604 (HMM): influenza RNA-dependent RNA polymerase subunit PB2
hemagglutinin	flu_hem	YES	PF00509 (HMM): hemagglutinin