Genome Property Definition Page

AccessionGenProp1053
NamerSAM/selenodomain system
TypeSYSTEM
DescriptionIn this uncharacterized system, the radical SAM domain protein (see TIGR04167) has a Cys-rich suffix domain modeled by PF12345. In at least eight reference genomes, one Cys is replaced by selenocysteine, suggesting enzymatic activity and a distinctive role. In a large number of genomes, the radical SAM enzyme is co-clustered with a member of family TIGR04169.
Parent PropertyGenProp0063: biosynthesis
GenProp0063: biosynthesis
GenProp0063: biosynthesis

Components
Step NameStep NumRequiredEvidence (Method)Evidence Go Terms
phosphoesterase family proteinP_esterNOTIGR04168 (HMM): TIGR04168 family protein
phosphoesterase family proteinP_esterNOTIGR04168 (HMM): TIGR04168 family protein
phosphoesterase family proteinP_esterNOTIGR04168 (HMM): TIGR04168 family protein
putative glycosyltransferase, CofC-likeglycCofYESTIGR04282 (HMM): transferase 1, rSAM/selenodomain-associated
putative glycosyltransferase, CofC-likeglycCofYESTIGR04282 (HMM): transferase 1, rSAM/selenodomain-associated
putative glycosyltransferase, CofC-likeglycCofYESTIGR04282 (HMM): transferase 1, rSAM/selenodomain-associated
putative glycosyltransferase, MftF-likeglycMftYESTIGR04283 (HMM): transferase 2, rSAM/selenodomain-associated
putative glycosyltransferase, MftF-likeglycMftYESTIGR04283 (HMM): transferase 2, rSAM/selenodomain-associated
putative glycosyltransferase, MftF-likeglycMftYESTIGR04283 (HMM): transferase 2, rSAM/selenodomain-associated
alkylhydroperoxidase/carboxymuconolactone decarboxylase family proteinperoxFamYESTIGR04169 (HMM): alkylhydroperoxidase/carboxymuconolactone decarboxylase family protein
alkylhydroperoxidase/carboxymuconolactone decarboxylase family proteinperoxFamYESTIGR04169 (HMM): alkylhydroperoxidase/carboxymuconolactone decarboxylase family protein
alkylhydroperoxidase/carboxymuconolactone decarboxylase family proteinperoxFamYESTIGR04169 (HMM): alkylhydroperoxidase/carboxymuconolactone decarboxylase family protein
radical SAM/selenodomain proteinrSAM_SeCYESTIGR04167 (HMM): radical SAM/Cys-rich domain protein
radical SAM/selenodomain proteinrSAM_SeCYESTIGR04167 (HMM): radical SAM/Cys-rich domain protein
radical SAM/selenodomain proteinrSAM_SeCYESTIGR04167 (HMM): radical SAM/Cys-rich domain protein

Parent Properties
AccessionName
GenProp0063biosynthesis
GenProp0063biosynthesis
GenProp0063biosynthesis


Sibling Properties
AccessionName
GenProp0077natural products biosynthesis
GenProp0126amino acid biosynthesis
GenProp0184cofactor biosynthesis
GenProp0185nucleotide biosynthesis
GenProp0186storage and structural polymer biosynthesis
GenProp0197protein biosynthesis
GenProp0219spermidine biosynthesis from arginine (via agmatine)
GenProp0267osmolyte biosynthesis
GenProp0641spermidine biosynthesis from putrescine and S-adenosylmethionine
GenProp0642putrescine biosynthesis from arginine utilizing agmatinase
GenProp0643putrescine biosynthesis from arginine via ornithine
GenProp0644putrescine biosynthesis from glutamate via ornithine
GenProp0645putrescine biosynthesis
GenProp0724phosphonoacetaldehyde biosynthesis from phosphoenolpyruvate
GenProp0738agmatine to putrescine via N-carbamoylputrescine
GenProp0795carbohydrate biosynthesis
GenProp0838lipid biosynthesis
GenProp0909capreomycidine biosynthesis
GenProp0942alkane biosynthesis, cyanobacterial
GenProp1056rhizo-twelve system
GenProp1057radical SAM/SPASM system GeoRSP