Genome Property Definition Page

AccessionGenProp1056
Namerhizo-twelve system
TypeSYSTEM
DescriptionThis Genome Property describes an uncharacterized oligosaccharide biosynthesis system, containing twelve or thirteen conserved sugar epimerases, glycosyltransferases, and uncharacterized enzymes. This system is common in plant-associated and soil bacteria, including multiple species of Bradyrhizobium, Mesorhizobium, and Methylobacterium. The designation rhizo-twelve reflects the species distribution favoring rhizobial bacteria and the size of the cassette. Note that this Genome Property should be regarded as still under construction until the number of components defined reaches twelve.
Parent PropertyGenProp0063: biosynthesis
GenProp0063: biosynthesis
GenProp0063: biosynthesis

Components
Step NameStep NumRequiredEvidence (Method)Evidence Go Terms
methyltransferase, Rta_06860 familyRhTw01YESTIGR04290 (HMM): methyltransferase, Rta_06860 family
methyltransferase, Rta_06860 familyRhTw01YESTIGR04290 (HMM): methyltransferase, Rta_06860 family
methyltransferase, Rta_06860 familyRhTw01YESTIGR04290 (HMM): methyltransferase, Rta_06860 family
B12-binding domain/radical SAM domain proteinRhTw02NOTIGR04295 (HMM): B12-binding domain/radical SAM domain protein, rhizo-twelve system
B12-binding domain/radical SAM domain proteinRhTw02NOTIGR04295 (HMM): B12-binding domain/radical SAM domain protein, rhizo-twelve system
B12-binding domain/radical SAM domain proteinRhTw02NOTIGR04295 (HMM): B12-binding domain/radical SAM domain protein, rhizo-twelve system

Parent Properties
AccessionName
GenProp0063biosynthesis
GenProp0063biosynthesis
GenProp0063biosynthesis


Sibling Properties
AccessionName
GenProp0077natural products biosynthesis
GenProp0126amino acid biosynthesis
GenProp0184cofactor biosynthesis
GenProp0185nucleotide biosynthesis
GenProp0186storage and structural polymer biosynthesis
GenProp0197protein biosynthesis
GenProp0219spermidine biosynthesis from arginine (via agmatine)
GenProp0267osmolyte biosynthesis
GenProp0641spermidine biosynthesis from putrescine and S-adenosylmethionine
GenProp0642putrescine biosynthesis from arginine utilizing agmatinase
GenProp0643putrescine biosynthesis from arginine via ornithine
GenProp0644putrescine biosynthesis from glutamate via ornithine
GenProp0645putrescine biosynthesis
GenProp0724phosphonoacetaldehyde biosynthesis from phosphoenolpyruvate
GenProp0738agmatine to putrescine via N-carbamoylputrescine
GenProp0795carbohydrate biosynthesis
GenProp0838lipid biosynthesis
GenProp0909capreomycidine biosynthesis
GenProp0942alkane biosynthesis, cyanobacterial
GenProp1053rSAM/selenodomain system
GenProp1057radical SAM/SPASM system GeoRSP