Genome Property Definition Page
| Accession | GenProp1057 |
| Name | radical SAM/SPASM system GeoRSP |
| Type | SYSTEM |
| Description | This Genome Property represents a functional cassette (with unknown boundaries) in several species of Geobacter, in genomic regions that include high-molecular-weight cytochrome c family proteins. The cassette has a PqqD family protein, a radical SAM/SPASM domain protein similar to PqqE, and an additional SPASM domain protein that appears also to have a degenerate radical SAM-like region. Unlike the SynChlorMet system, with similar components, no putative precursor peptide for ribosomal natural product formation has been found. |
| Parent Property | GenProp0063: biosynthesis |
Components
| Step Name | Step Num | Required | Evidence (Method) | Evidence Go Terms |
|---|---|---|---|---|
| GeoRSP system PqqD family protein | GeoPqqD | YES | TIGR04302 (HMM): GeoRSP system PqqD family protein | |
| GeoRSP system SPASM domain protein | GeoSPAS | YES | TIGR04304 (HMM): GeoRSP system SPASM domain protein | |
| GeoRSP system radical SAM/SPASM protein | GeorSAM | YES | TIGR04303 (HMM): GeoRSP system radical SAM/SPASM protein |
Parent Properties
| Accession | Name |
|---|---|
| GenProp0063 | biosynthesis |
Sibling Properties
| Accession | Name |
|---|---|
| GenProp0077 | natural products biosynthesis |
| GenProp0126 | amino acid biosynthesis |
| GenProp0184 | cofactor biosynthesis |
| GenProp0185 | nucleotide biosynthesis |
| GenProp0186 | storage and structural polymer biosynthesis |
| GenProp0197 | protein biosynthesis |
| GenProp0219 | spermidine biosynthesis from arginine (via agmatine) |
| GenProp0267 | osmolyte biosynthesis |
| GenProp0641 | spermidine biosynthesis from putrescine and S-adenosylmethionine |
| GenProp0642 | putrescine biosynthesis from arginine utilizing agmatinase |
| GenProp0643 | putrescine biosynthesis from arginine via ornithine |
| GenProp0644 | putrescine biosynthesis from glutamate via ornithine |
| GenProp0645 | putrescine biosynthesis |
| GenProp0724 | phosphonoacetaldehyde biosynthesis from phosphoenolpyruvate |
| GenProp0738 | agmatine to putrescine via N-carbamoylputrescine |
| GenProp0795 | carbohydrate biosynthesis |
| GenProp0838 | lipid biosynthesis |
| GenProp0909 | capreomycidine biosynthesis |
| GenProp0942 | alkane biosynthesis, cyanobacterial |
| GenProp1053 | rSAM/selenodomain system |
| GenProp1056 | rhizo-twelve system |