Genome Property Definition Page

Nameradical SAM/SPASM system GeoRSP
DescriptionThis Genome Property represents a functional cassette (with unknown boundaries) in several species of Geobacter, in genomic regions that include high-molecular-weight cytochrome c family proteins. The cassette has a PqqD family protein, a radical SAM/SPASM domain protein similar to PqqE, and an additional SPASM domain protein that appears also to have a degenerate radical SAM-like region. Unlike the SynChlorMet system, with similar components, no putative precursor peptide for ribosomal natural product formation has been found.
Parent PropertyGenProp0063: biosynthesis

Step NameStep NumRequiredEvidence (Method)Evidence Go Terms
GeoRSP system PqqD family proteinGeoPqqDYESTIGR04302 (HMM): GeoRSP system PqqD family protein
GeoRSP system SPASM domain proteinGeoSPASYESTIGR04304 (HMM): GeoRSP system SPASM domain protein
GeoRSP system radical SAM/SPASM proteinGeorSAMYESTIGR04303 (HMM): GeoRSP system radical SAM/SPASM protein

Parent Properties

Sibling Properties
GenProp0077natural products biosynthesis
GenProp0126amino acid biosynthesis
GenProp0184cofactor biosynthesis
GenProp0185nucleotide biosynthesis
GenProp0186storage and structural polymer biosynthesis
GenProp0197protein biosynthesis
GenProp0219spermidine biosynthesis from arginine (via agmatine)
GenProp0267osmolyte biosynthesis
GenProp0641spermidine biosynthesis from putrescine and S-adenosylmethionine
GenProp0642putrescine biosynthesis from arginine utilizing agmatinase
GenProp0643putrescine biosynthesis from arginine via ornithine
GenProp0644putrescine biosynthesis from glutamate via ornithine
GenProp0645putrescine biosynthesis
GenProp0724phosphonoacetaldehyde biosynthesis from phosphoenolpyruvate
GenProp0738agmatine to putrescine via N-carbamoylputrescine
GenProp0795carbohydrate biosynthesis
GenProp0838lipid biosynthesis
GenProp0909capreomycidine biosynthesis
GenProp0942alkane biosynthesis, cyanobacterial
GenProp1053rSAM/selenodomain system
GenProp1056rhizo-twelve system