Genome Property Definition Page

AccessionGenProp1082
Name16S rRNA C1402 m(4)Cm modification
TypeSYSTEM
DescriptionRsmH (previously MraW) and RsmI (previously YraL) together make a dimethyl modification to an invariant cytidine nucleotide found in the 16S rRNA of all bacteria (site in C1402 in E. coli).
JCVI RoletRNA and rRNA base modification
Parent PropertyGenProp0819: RNA metabolism
GenProp0819: RNA metabolism
GenProp0819: RNA metabolism
Literature References
[ 1 ]Kimura S, Suzuki T  Fine-tuning of the ribosomal decoding center by conserved methyl-modifications in the Escherichia coli 16S rRNA.  Nucleic Acids Res. 2010 Mar;38(4):1341-52.  PMID 19965768
[ 1 ]Kimura S, Suzuki T  Fine-tuning of the ribosomal decoding center by conserved methyl-modifications in the Escherichia coli 16S rRNA.  Nucleic Acids Res. 2010 Mar;38(4):1341-52.  PMID 19965768
[ 1 ]Kimura S, Suzuki T  Fine-tuning of the ribosomal decoding center by conserved methyl-modifications in the Escherichia coli 16S rRNA.  Nucleic Acids Res. 2010 Mar;38(4):1341-52.  PMID 19965768
Gene Ontology TermGO:0000154: rRNA modification (biological_process)
GO:0000154: rRNA modification (biological_process)
GO:0000154: rRNA modification (biological_process)
GO:0000154: rRNA modification (biological_process)
GO:0000154: rRNA modification (biological_process)
GO:0000154: rRNA modification (biological_process)
GO:0000154: rRNA modification (biological_process)
GO:0000154: rRNA modification (biological_process)
GO:0000154: rRNA modification (biological_process)

Components
Step NameStep NumRequiredEvidence (Method)Evidence Go Terms
16S rRNA (cytosine(1402)-N(4))-methyltransferaseRsmHYESTIGR00006 (HMM): 16S rRNA (cytosine(1402)-N(4))-methyltransferase
TIGR00006 (HMM): 16S rRNA (cytosine(1402)-N(4))-methyltransferase
GO:0000154: rRNA modification
GO:0000154: rRNA modification
16S rRNA (cytosine(1402)-N(4))-methyltransferaseRsmHYESTIGR00006 (HMM): 16S rRNA (cytosine(1402)-N(4))-methyltransferase
TIGR00006 (HMM): 16S rRNA (cytosine(1402)-N(4))-methyltransferase
GO:0000154: rRNA modification
GO:0000154: rRNA modification
16S rRNA (cytosine(1402)-N(4))-methyltransferaseRsmHYESTIGR00006 (HMM): 16S rRNA (cytosine(1402)-N(4))-methyltransferase
TIGR00006 (HMM): 16S rRNA (cytosine(1402)-N(4))-methyltransferase
GO:0000154: rRNA modification
GO:0000154: rRNA modification
16S rRNA (cytidine(1402)-2'-O)-methyltransferaseRsmIYESTIGR00096 (HMM): 16S rRNA (cytidine(1402)-2'-O)-methyltransferase
TIGR00096 (HMM): 16S rRNA (cytidine(1402)-2'-O)-methyltransferase
GO:0000154: rRNA modification
GO:0000154: rRNA modification
16S rRNA (cytidine(1402)-2'-O)-methyltransferaseRsmIYESTIGR00096 (HMM): 16S rRNA (cytidine(1402)-2'-O)-methyltransferase
TIGR00096 (HMM): 16S rRNA (cytidine(1402)-2'-O)-methyltransferase
GO:0000154: rRNA modification
GO:0000154: rRNA modification
16S rRNA (cytidine(1402)-2'-O)-methyltransferaseRsmIYESTIGR00096 (HMM): 16S rRNA (cytidine(1402)-2'-O)-methyltransferase
TIGR00096 (HMM): 16S rRNA (cytidine(1402)-2'-O)-methyltransferase
GO:0000154: rRNA modification
GO:0000154: rRNA modification

Parent Properties
AccessionName
GenProp0819RNA metabolism
GenProp0819RNA metabolism
GenProp0819RNA metabolism


Sibling Properties
AccessionName
GenProp0258tRNA aminoacylation
GenProp0262RNA polymerase, bacterial
GenProp04826S RNA (eubacterial RNA polymerase regulator)
GenProp0677queuosine (Q-tRNA) biosynthesis from preQ0
GenProp0692selenouridine-containing tRNA
GenProp0704tRNA U34 carboxymethylaminomethyl modification
GenProp0898RNA ligase/unknown protein pair
GenProp0948RNA repair, Hen1/Pnkp system
GenProp1060tRNA N6-threonylcarbamoyladenosine modification
GenProp1077tRNA(Pro) cmo5UGG modification