HMM Summary Page: TIGR00009

AccessionTIGR00009
NameL28
Functionribosomal protein L28
Gene SymbolrpmB
Trusted Cutoff48.30
Domain Trusted Cutoff48.30
Noise Cutoff42.85
Domain Noise Cutoff42.85
Isology Typeequivalog
HMM Length58
Mainrole CategoryProtein synthesis
Subrole CategoryRibosomal proteins: synthesis and modification
Gene Ontology TermGO:0000311: plastid large ribosomal subunit cellular_component
GO:0003735: structural constituent of ribosome molecular_function
GO:0006412: translation biological_process
GO:0022625: cytosolic large ribosomal subunit cellular_component
AuthorHolt IE, Richardson DL, Haft DH
Entry DateApr 20 1999 2:04PM
Last ModifiedFeb 14 2011 3:27PM
CommentThis HMM describes bacterial and chloroplast forms of the 50S ribosomal protein L28, a polypeptide about 60 amino acids in length. Mitochondrial homologs differ substantially in architecture (e.g. SP|P36525 from Saccharomyces cerevisiae, which is 258 amino acids long) and are not included.
ReferencesSE TIGR DR PFAM; PF00830; Ribosomal_L28 DR INTERPRO; IPR001383; Ribosomal_L28 DR HAMAP; MF_00373; 502 of 509
Genome PropertyGenProp0174: ribosome, bacterial, large subunit (HMM)
GenProp0799: bacterial core gene set, exactly 1 per genome (HMM)