HMM Summary Page: TIGR00165

AccessionTIGR00165
NameS18
Functionribosomal protein S18
Gene SymbolrpsR
Trusted Cutoff38.75
Domain Trusted Cutoff38.75
Noise Cutoff17.85
Domain Noise Cutoff17.85
Isology Typeequivalog
HMM Length70
Mainrole CategoryProtein synthesis
Subrole CategoryRibosomal proteins: synthesis and modification
Gene Ontology TermGO:0000314: organellar small ribosomal subunit cellular_component
GO:0003735: structural constituent of ribosome molecular_function
GO:0006412: translation biological_process
GO:0022627: cytosolic small ribosomal subunit cellular_component
AuthorHaft DH
Entry DateApr 20 1999 2:04PM
Last ModifiedFeb 14 2011 3:27PM
CommentThis ribosomal small subunit protein is found in all eubacteria so far, as well as in chloroplasts. YER050C from Saccharomyces cerevisiae and a related protein from Caenorhabditis elegans appear to be homologous and may represent mitochondrial forms. The trusted cutoff is set high enough that these two candidate S18 proteins are not categorized automatically.
ReferencesSE TIGR GA hmmls AL clustalw, belvu, seaview DR PROSITE; PDOC00056; RIBOSOMAL_S18 DR HAMAP; MF_00270; 691 of 708
Genome PropertyGenProp0175: ribosome, bacterial, small subunit (HMM)
GenProp0799: bacterial core gene set, exactly 1 per genome (HMM)