HMM Summary Page: TIGR00166

AccessionTIGR00166
NameS6
Functionribosomal protein S6
Gene SymbolrpsF
Trusted Cutoff42.90
Domain Trusted Cutoff42.90
Noise Cutoff20.50
Domain Noise Cutoff20.50
Isology Typeequivalog
HMM Length95
Mainrole CategoryProtein synthesis
Subrole CategoryRibosomal proteins: synthesis and modification
Gene Ontology TermGO:0000314: organellar small ribosomal subunit cellular_component
GO:0003735: structural constituent of ribosome molecular_function
GO:0006412: translation biological_process
GO:0022627: cytosolic small ribosomal subunit cellular_component
AuthorHaft DH
Entry DateApr 20 1999 2:04PM
Last ModifiedFeb 14 2011 3:27PM
CommentThe ribosomal protein S6 ortholog family, including yeast MRP17, shows more than two-fold length variation from 95 residues in Bacillus subtilis to 215 in Mycoplasma pneumoniae. This length variation comes primarily from poorly conserved C-terminal extensions that are particularly long in the Mycoplasmas. MRP17 protein is a component of the small ribosomal subunit in mitochondria, and is shown here to be an ortholog of S6.
ReferencesSE TIGR GA hmmls AL clustalw, belvu, seaview DR PROSITE; PDOC00805; RIBOSOMAL_S6 DR PFAM; PF01250; Ribosomal_S6 DR ECOCYC; EG10905; rpsF DR HAMAP; MF_00360; 488 of 502
Genome PropertyGenProp0175: ribosome, bacterial, small subunit (HMM)
GenProp0799: bacterial core gene set, exactly 1 per genome (HMM)