HMM Summary Page: TIGR00405

AccessionTIGR00405
NameL26e_arch
Functionribosomal protein L24
Gene SymbolrplX
Trusted Cutoff69.95
Domain Trusted Cutoff69.95
Noise Cutoff49.85
Domain Noise Cutoff49.85
Isology Typeequivalog
HMM Length145
Mainrole CategoryProtein synthesis
Subrole CategoryRibosomal proteins: synthesis and modification
Gene Ontology TermGO:0003735: structural constituent of ribosome molecular_function
GO:0006412: translation biological_process
GO:0022625: cytosolic large ribosomal subunit cellular_component
AuthorHaft DH, Loftus BJ
Entry DateApr 20 1999 2:09PM
Last ModifiedFeb 14 2011 3:27PM
CommentThis protein contains a KOW domain, shared by bacterial NusG and the L24p/L26e family of ribosomal proteins. Although called archaeal NusG in several publications, it is the only close homolog of eukaryotic L26e in archaeal genomes, shares an operon with L11 in many genomes, and has been sequenced from purified ribosomes. It is here designated as a ribosomal protein for these reasons.
ReferencesA2 hmmalign DR EGAD;40837; DR Swissprot; Q46494; DR EGAD; 44546; DR Swissprot; Q57818; DR PROSITE; PDOC00852; DR PFAM; PF00467; RL J Mol Biol. 1998 May 1;278(2):307-16. SE TIGR GA hmmls AL clustalw, belvu BD 0471
Genome PropertyGenProp0831: archaeal core gene set, exactly 1 per genome (HMM)