HMM Summary Page: TIGR00426

Functioncompetence protein ComEA helix-hairpin-helix repeat region
Trusted Cutoff53.10
Domain Trusted Cutoff53.10
Noise Cutoff34.50
Domain Noise Cutoff34.50
Isology Typesubfamily_domain
HMM Length69
Mainrole CategoryCellular processes
Subrole CategoryDNA transformation
AuthorLoftus BJ, Haft DH
Entry DateApr 20 1999 2:05PM
Last ModifiedFeb 14 2011 3:27PM
CommentMembers of the subfamily recognized by this model include competence protein ComEA and closely related proteins from a number of species that exhibit competence for transformation by exongenous DNA, including Streptococcus pneumoniae, Bacillus subtilis, Neisseria meningitidis, and Haemophilus influenzae. This model represents a region of two tandem copies of a helix-hairpin-helix domain (PF00633), each about 30 residues in length. Limited sequence similarity can be found among some members of this family N-terminal to the region covered by this model.
ReferencesDR Swissprot; P39694; DR PFAM; PF00633; Helix-hairpin-helix motif RM 98241533 SE TIGR
Genome PropertyGenProp0311: competence-related genes (HMM)
GenProp0311: competence-related genes (HMM)
GenProp0311: competence-related genes (HMM)