HMM Summary Page: TIGR00448

AccessionTIGR00448
NamerpoE
FunctionDNA-directed RNA polymerase
Gene SymbolrpoE
Trusted Cutoff124.20
Domain Trusted Cutoff124.20
Noise Cutoff107.75
Domain Noise Cutoff107.75
Isology Typeequivalog
EC Number2.7.7.6
HMM Length179
Mainrole CategoryTranscription
Subrole CategoryDNA-dependent RNA polymerase
Gene Ontology TermGO:0003899: DNA-directed RNA polymerase activity molecular_function
GO:0003899: DNA-directed RNA polymerase activity molecular_function
GO:0006350: transcription biological_process
GO:0006350: transcription biological_process
AuthorLoftus BJ
Entry DateApr 20 1999 2:09PM
Last ModifiedFeb 14 2011 3:27PM
CommentThis family seems to be confined to the archea and eukaryotic taxa and are quite dissimilar to E.coli rpoE.
ReferencesA2 hmmalign DR EGAD;54050, DR P35718; DR EGAD;106638 SE TIGR GA hmmls AL clustalw, belvu BD 0519
Genome PropertyGenProp0831: archaeal core gene set, exactly 1 per genome (HMM)
GenProp0831: archaeal core gene set, exactly 1 per genome (HMM)