HMM Summary Page: TIGR00597

FunctionDNA repair protein rad10
Trusted Cutoff72.90
Domain Trusted Cutoff72.90
Noise Cutoff45.70
Domain Noise Cutoff45.70
Isology Typesubfamily
HMM Length112
Mainrole CategoryDNA metabolism
Subrole CategoryDNA replication, recombination, and repair
AuthorLoftus BJ, Eisen JA
Entry DateOct 19 1999 6:19PM
Last ModifiedFeb 14 2011 3:27PM
CommentAll proteins in this family for which functions are known are components in a multiprotein endonuclease complex (usually made up of Rad1 and Rad10 homologs). This complex is used primarily for nucleotide excision repair but also for some aspects of recombination repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
ReferencesA2 hmmalign GA hmmsearch DR EGAD; 79372; DR SWISSPROT; Q06182; RM 93117111;