HMM Summary Page: TIGR00730
| Accession | TIGR00730 |
| Name | TIGR00730 |
| Function | TIGR00730 family protein |
| Trusted Cutoff | 96.35 |
| Domain Trusted Cutoff | 96.35 |
| Noise Cutoff | 63.80 |
| Domain Noise Cutoff | 63.80 |
| Isology Type | hypoth_equivalog |
| HMM Length | 178 |
| Mainrole Category | Hypothetical proteins |
| Subrole Category | Conserved |
| Author | Haft DH |
| Entry Date | Feb 22 2000 11:31AM |
| Last Modified | Feb 14 2011 3:27PM |
| Comment | This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this HMM show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions. |
| References | RN [1] RM PMID:15459330 RT Crystal structures of possible lysine decarboxylases from Thermus thermophilus HB8. RA Kukimoto-Niino M, Murayama K, Kato-Murayama M, Idaka M, Bessho Y, Tatsuguchi A, Ushikoshi-Nakayama R, Terada T, Kuramitsu S, Shirouzu M, Yokoyama S RL Protein Sci. 2004 Nov;13(11):3038-42. Epub 2004 Sep 30. |