HMM Summary Page: TIGR01008

AccessionTIGR01008
NameuS3_euk_arch
Functionribosomal protein uS3
Gene SymbolrpsC
Trusted Cutoff150.25
Domain Trusted Cutoff150.25
Noise Cutoff120.00
Domain Noise Cutoff120.00
Isology Typeequivalog
HMM Length195
Mainrole CategoryProtein synthesis
Subrole CategoryRibosomal proteins: synthesis and modification
Gene Ontology TermGO:0003735: structural constituent of ribosome molecular_function
GO:0003735: structural constituent of ribosome molecular_function
GO:0003735: structural constituent of ribosome molecular_function
GO:0006412: translation biological_process
GO:0006412: translation biological_process
GO:0006412: translation biological_process
GO:0022627: cytosolic small ribosomal subunit cellular_component
GO:0022627: cytosolic small ribosomal subunit cellular_component
GO:0022627: cytosolic small ribosomal subunit cellular_component
AuthorHaft DH
Entry DateOct 27 2000 1:18PM
Last ModifiedSep 4 2014 11:52AM
CommentThis model describes ribosomal protein S3 of the eukaryotic cytosol and of the archaea. TIGRFAMs model TIGR01009 describes the bacterial/organellar type, although the organellar types have a different architecture with long insertions and may score poorly.
ReferencesDR HAMAP; MF_01309; 42 of 718
Genome PropertyGenProp0831: archaeal core gene set, exactly 1 per genome (HMM)
GenProp0815: archaeal-only core gene set (HMM)
GenProp0831: archaeal core gene set, exactly 1 per genome (HMM)
GenProp0815: archaeal-only core gene set (HMM)
GenProp0831: archaeal core gene set, exactly 1 per genome (HMM)
GenProp0815: archaeal-only core gene set (HMM)