HMM Summary Page: TIGR01009

AccessionTIGR01009
NamerpsC_bact
Functionribosomal protein S3
Gene SymbolrpsC
Trusted Cutoff114.50
Domain Trusted Cutoff114.50
Noise Cutoff87.40
Domain Noise Cutoff87.40
Isology Typeequivalog
HMM Length212
Mainrole CategoryProtein synthesis
Subrole CategoryRibosomal proteins: synthesis and modification
Gene Ontology TermGO:0000312: plastid small ribosomal subunit cellular_component
GO:0003735: structural constituent of ribosome molecular_function
GO:0006412: translation biological_process
GO:0022627: cytosolic small ribosomal subunit cellular_component
AuthorHaft DH
Entry DateOct 27 2000 1:37PM
Last ModifiedFeb 14 2011 3:27PM
CommentThis model describes the bacterial type of ribosomal protein S3. Chloroplast and mitochondrial forms have large, variable inserts between conserved N-terminal and C-terminal domains. This model recognizes all bacterial forms and many chloroplast forms above the trusted cutoff score. TIGRFAMs model TIGR01008 describes S3 of the eukaryotic cytosol and of the archaea.
References DR HAMAP; MF_01309; 668 of 718
Genome PropertyGenProp0175: ribosome, bacterial, small subunit (HMM)
GenProp0799: bacterial core gene set, exactly 1 per genome (HMM)