HMM Summary Page: TIGR01045

Functionrickettsial palindromic element RPE1 domain
Trusted Cutoff30.00
Domain Trusted Cutoff30.00
Noise Cutoff29.25
Domain Noise Cutoff29.25
Isology Typedomain
HMM Length48
AuthorHaft DH
Entry DateNov 20 2000 3:04PM
Last ModifiedMar 2 2011 2:55PM
CommentThis HMM describes protein translations of the first family described, RPE1, of Rickettsia palindromic elements (RPE). In Rickettsia conorii, 19 copies are found within protein coding regions, where they encode an insert relative to homologs from other species but do not disrupt the reading frame. Insertion is always in the same reading frame. This model finds RPE-encoded regions in several Rickettsial species and, so far, no where else.
ReferencesRM 20485642 RT Selfish DNA in protein-coding genes of rickettsia. RA Ogata H, Audic S, Barbe V, Artiguenave F, Fournier PE, Raoult D, Claverie JM RL Science 2000 Oct 13;290(5490):347-50 DR HAMAP; MF_02005; 1 of 47
Genome PropertyGenProp0476: protein-coding palindromic elements (HMM)