HMM Summary Page: TIGR01690

Functionintegrative conjugative element protein, RAQPRD family
Trusted Cutoff60.85
Domain Trusted Cutoff60.85
Noise Cutoff24.00
Domain Noise Cutoff24.00
Isology Typehypoth_equivalog
HMM Length96
Mainrole CategoryMobile and extrachromosomal element functions
Subrole CategoryPlasmid functions
AuthorHaft DH
Entry DateSep 20 2002 4:19PM
Last ModifiedFeb 14 2011 3:27PM
CommentThis HMM represents a small family of proteins about 100 amino acids in length, including a predicted signal sequence and a perfectly conserved motif RAQPRD towards the C-terminus. Members are found in the Pseudomonas putida TOL plasmid pWW0 and in cryptic plasmid regions of Salmonella enterica subsp. enterica serovar Typhi and Pseudomonas syringae DC3000. The function is unknown.
Genome PropertyGenProp0855: integrating conjugative element, PFGI-1 class (HMM)