HMM Summary Page: TIGR01760

Functionphage tail tape measure protein, TP901 family, core region
Trusted Cutoff28.80
Domain Trusted Cutoff28.80
Noise Cutoff27.50
Domain Noise Cutoff27.50
Isology Typeequivalog_domain
HMM Length349
Mainrole CategoryMobile and extrachromosomal element functions
Subrole CategoryProphage functions
Gene Ontology TermGO:0005198: structural molecule activity molecular_function
GO:0016032: viral reproduction biological_process
AuthorHaft DH
Entry DateDec 10 2002 10:14AM
Last ModifiedFeb 14 2011 3:27PM
CommentThis HMM represents a reasonably well conserved core region of a family of phage tail proteins. The member from phage TP901-1 was characterized as a tail length tape measure protein in that a shortened form of the protein leads to phage with proportionately shorter tails.
ReferencesRM 11040123 RT Mutational analysis of two structural genes of the temperate lactococcal bacteriophage TP901-1 involved in tail length determination and baseplate assembly. RA Pedersen M, Ostergaard S, Bresciani J, Vogensen FK. RL Virology 2000 Oct 25;276(2):315-28
Genome PropertyGenProp0208: phage: major features (HMM)