HMM Summary Page: TIGR01866

AccessionTIGR01866
Namecas_Csn2
FunctionCRISPR type II-A/NMEMI-associated protein Csn2
Gene Symbolcsn2
Trusted Cutoff35.00
Domain Trusted Cutoff35.00
Noise Cutoff25.00
Domain Noise Cutoff25.00
Isology Typeequivalog
HMM Length222
Mainrole CategoryMobile and extrachromosomal element functions
Subrole CategoryOther
Gene Ontology TermGO:0003674: molecular_function molecular_function
GO:0003674: molecular_function molecular_function
GO:0003674: molecular_function molecular_function
GO:0043571: maintenance of CRISPR repeat elements biological_process
GO:0043571: maintenance of CRISPR repeat elements biological_process
GO:0043571: maintenance of CRISPR repeat elements biological_process
AuthorHaft DH
Entry DateApr 3 2003 2:35PM
Last ModifiedFeb 14 2011 3:27PM
CommentCRISPR loci appear to be mobile elements with a wide host range. This HMM represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas loci. The species range so far for this subtype is animal pathogens and commensals only. This protein is present in some but not all NMENI CRISPR/Cas loci.
ReferencesDR URL http://www.tigr.org/tigr-scripts/CMR2/genome_property_def.spl?prop=2003 DR URL http://www.tigr.org/tigr-scripts/CMR2/genome_property_def.spl?prop=57301 RN [1] RT A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/cas subtypes exist in prokaryotic genomes RA Haft DH, Selengut JD, Mongodin EF, Nelsen KE RL PLOS Comput. Biol. 1(6), e60-e69, 2005
Genome PropertyGenProp0314: CRISPR system, II/Nmeni subtype (HMM)
GenProp0314: CRISPR system, II/Nmeni subtype (HMM)
GenProp0314: CRISPR system, II/Nmeni subtype (HMM)
GenProp0021: CRISPR region (HMM)
GenProp0021: CRISPR region (HMM)
GenProp0021: CRISPR region (HMM)