HMM Summary Page: TIGR01881

AccessionTIGR01881
Namecas_Cmr5
FunctionCRISPR type III-B/RAMP module-associated protein Cmr5
Gene Symbolcmr5
Trusted Cutoff27.90
Domain Trusted Cutoff27.90
Noise Cutoff26.90
Domain Noise Cutoff26.90
Isology Typeequivalog
HMM Length143
Mainrole CategoryMobile and extrachromosomal element functions
Subrole CategoryOther
Gene Ontology TermGO:0003674: molecular_function molecular_function
GO:0003674: molecular_function molecular_function
GO:0003674: molecular_function molecular_function
GO:0043571: maintenance of CRISPR repeat elements biological_process
GO:0043571: maintenance of CRISPR repeat elements biological_process
GO:0043571: maintenance of CRISPR repeat elements biological_process
AuthorHaft DH
Entry DateApr 22 2003 11:53AM
Last ModifiedFeb 14 2011 3:27PM
CommentCRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This HMM family, represented by TM1791.1 of Thermotoga maritima, is found in both archaeal and bacterial species as part of the 6-gene CRISPR RAMP module.
ReferencesDR URL http://www.tigr.org/tigr-scripts/CMR2/genome_property_def.spl?prop=2003 DR URL http://www.tigr.org/tigr-scripts/CMR2/genome_property_def.spl?prop=57303 RN [1] RT A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/cas subtypes exist in prokaryotic genomes RA Haft DH, Selengut JD, Mongodin EF, Nelsen KE RL PLOS Comput. Biol. 1(6), e60-e69, 2005 RN [2] RM 11788711 RT A DNA repair system specific for thermophilic Archaea and bacteria predicted by genomic context analysis. RA Makarova KS, Aravind L, Grishin NV, Rogozin IB, Koonin EV. RL Nucleic Acids Res. 2002 Jan 15;30(2):482-96.
Genome PropertyGenProp0021: CRISPR region (HMM)
GenProp0316: CRISPR system, III-B/RAMP module subtype (HMM)
GenProp0021: CRISPR region (HMM)
GenProp0316: CRISPR system, III-B/RAMP module subtype (HMM)
GenProp0021: CRISPR region (HMM)
GenProp0316: CRISPR system, III-B/RAMP module subtype (HMM)