HMM Summary Page: TIGR01888

AccessionTIGR01888
Namecas_cmr3
FunctionCRISPR type III-B/RAMP module-associated protein Cmr3
Gene Symbolcmr3
Trusted Cutoff100.40
Domain Trusted Cutoff100.40
Noise Cutoff36.20
Domain Noise Cutoff36.20
Isology Typeequivalog
HMM Length346
Mainrole CategoryMobile and extrachromosomal element functions
Subrole CategoryOther
Gene Ontology TermGO:0003674: molecular_function molecular_function
GO:0003674: molecular_function molecular_function
GO:0003674: molecular_function molecular_function
GO:0005575: cellular_component cellular_component
GO:0005575: cellular_component cellular_component
GO:0005575: cellular_component cellular_component
GO:0043571: maintenance of CRISPR repeat elements biological_process
GO:0043571: maintenance of CRISPR repeat elements biological_process
GO:0043571: maintenance of CRISPR repeat elements biological_process
AuthorHaft DH
Entry DateApr 23 2003 11:57AM
Last ModifiedFeb 14 2011 3:27PM
CommentCRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This highly divergent family is found in at least ten different archaeal and bacterial species as part of the CRISPR RAMP modulue but is not a member of the RAMP superfamily itself. A typical example is TM1793 from Thermotoga maritima.
ReferencesDR URL http://www.tigr.org/tigr-scripts/CMR2/genome_property_def.spl?prop=2003 DR URL http://www.tigr.org/tigr-scripts/CMR2/genome_property_def.spl?prop=57303 RN [1] RT A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/cas subtypes exist in prokaryotic genomes RA Haft DH, Selengut JD, Mongodin EF, Nelsen KE RL PLOS Comput. Biol. 1(6), e60-e69, 2005 RN [2] RM 11788711 RT A DNA repair system specific for thermophilic Archaea and bacteria predicted by genomic context analysis. RA Makarova KS, Aravind L, Grishin NV, Rogozin IB, Koonin EV. RL Nucleic Acids Res. 2002 Jan 15;30(2):482-96.
Genome PropertyGenProp0021: CRISPR region (HMM)
GenProp0021: CRISPR region (HMM)
GenProp0316: CRISPR system, III-B/RAMP module subtype (HMM)
GenProp0316: CRISPR system, III-B/RAMP module subtype (HMM)
GenProp0021: CRISPR region (HMM)
GenProp0021: CRISPR region (HMM)
GenProp0316: CRISPR system, III-B/RAMP module subtype (HMM)
GenProp0316: CRISPR system, III-B/RAMP module subtype (HMM)
GenProp0021: CRISPR region (HMM)
GenProp0021: CRISPR region (HMM)
GenProp0316: CRISPR system, III-B/RAMP module subtype (HMM)
GenProp0316: CRISPR system, III-B/RAMP module subtype (HMM)