HMM Summary Page: TIGR01908

AccessionTIGR01908
Namecas_CXXC_CXXC
FunctionCRISPR-associated protein Cas8a1/Cst1, subtype I-B/TNEAP
Gene Symbolcas8a1
Trusted Cutoff19.40
Domain Trusted Cutoff19.40
Noise Cutoff16.85
Domain Noise Cutoff16.85
Isology Typehypoth_equivalog_domain
HMM Length308
Mainrole CategoryMobile and extrachromosomal element functions
Subrole CategoryOther
Gene Ontology TermGO:0003674: molecular_function molecular_function
GO:0043571: maintenance of CRISPR repeat elements biological_process
AuthorHaft DH
Entry DateMay 8 2003 4:42PM
Last ModifiedFeb 14 2011 3:27PM
CommentCRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This (revised) HMM describes a conserved region from an otherwise highly divergent protein found in the Tneap subtype of CRISPR/Cas regions. This Cys-rich region features two motifs of CXXC.
ReferencesDR URL http://www.tigr.org/tigr-scripts/CMR2/genome_property_def.spl?prop=2003 DR URL http://www.tigr.org/tigr-scripts/CMR2/genome_property_def.spl?prop=57304 RN [1] RT A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/cas subtypes exist in prokaryotic genomes RA Haft DH, Selengut JD, Mongodin EF, Nelsen KE RL PLOS Comput. Biol. 1(6), e60-e69, 2005
Genome PropertyGenProp0317: CRISPR system, I-B subtype, Tneap branch (HMM)
GenProp0021: CRISPR region (HMM)