HMM Summary Page: TIGR02165

AccessionTIGR02165
Namecas_GSU0054
FunctionCRISPR-associated protein GSU0054/csb2, Dpsyc system
Gene Symbolcsb2
Trusted Cutoff45.00
Domain Trusted Cutoff45.00
Noise Cutoff30.00
Domain Noise Cutoff30.00
Isology Typehypoth_equivalog
HMM Length492
Mainrole CategoryMobile and extrachromosomal element functions
Subrole CategoryOther
Gene Ontology TermGO:0003674: molecular_function molecular_function
GO:0043571: maintenance of CRISPR repeat elements biological_process
AuthorHaft DH
Entry DateApr 19 2004 11:08AM
Last ModifiedFeb 14 2011 3:27PM
CommentThis HMM represents a CRISPR-associated protein from the Dpsyc subtype, named for Desulfotalea psychrophila LSv54. CRISPR systems confer resistance in prokaryotes to invasive DNA or RNA, including phage and plasmids. CRISPR-associated proteins typically are found near CRISPR repeats and other CRISPR-associated proteins, have low levels of sequence identify, have sequence relationships that suggest lateral transfer, and show some sequence similarity to DNA-active proteins such as helicases and repair proteins.
ReferencesDR URL http://www.tigr.org/tigr-scripts/CMR2/genome_property_def.spl?prop=2003 RN [1] RT A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/cas subtypes exist in prokaryotic genomes RA Haft DH, Selengut JD, Mongodin EF, Nelsen KE RL PLOS Comput. Biol. 1(6), e60-e69, 2005
Genome PropertyGenProp0469: CRISPR system, Dpsyc subtype (HMM)
GenProp0021: CRISPR region (HMM)