HMM Summary Page: TIGR02215

AccessionTIGR02215
Namephage_chp_gp8
Functionphage conserved hypothetical protein, phiE125 gp8 family
Trusted Cutoff39.00
Domain Trusted Cutoff39.00
Noise Cutoff30.80
Domain Noise Cutoff30.80
Isology Typehypoth_equivalog
HMM Length188
Mainrole CategoryMobile and extrachromosomal element functions
Subrole CategoryProphage functions
AuthorHaft DH
Entry DateMay 28 2004 5:15PM
Last ModifiedFeb 14 2011 3:27PM
CommentThis HMM describes a family of proteins found exclusively in phage or in prophage regions of bacterial genomes, including the phage-like Rhodobacter capsulatus gene transfer agent, which packages DNA. Members of this family show some similarity to members of PF05135, a putative DNA packaging protein family.
Genome PropertyGenProp0208: phage: major features (HMM)
GenProp0208: phage: major features (HMM)
GenProp0208: phage: major features (HMM)