HMM Summary Page: TIGR02276
| Accession | TIGR02276 |
| Name | beta_rpt_yvtn |
| Function | 40-residue YVTN family beta-propeller repeat |
| Trusted Cutoff | 27.85 |
| Domain Trusted Cutoff | 27.85 |
| Noise Cutoff | 20.50 |
| Domain Noise Cutoff | 20.50 |
| Isology Type | repeat |
| HMM Length | 42 |
| Author | Haft DH |
| Entry Date | Aug 30 2004 3:17PM |
| Last Modified | Feb 14 2011 3:27PM |
| Comment | This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam PF01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam PF00400). |
| References | DR PFAM; PF01436; NHL repeat DR PFAM; PF00400; WD domain, G-beta repeat DR PDB; 1L0Q_A.0; YVTN beta-propeller structure |