HMM Summary Page: TIGR02424

Functionpca operon transcription factor PcaQ
Gene SymbolpcaQ
Trusted Cutoff303.80
Domain Trusted Cutoff303.80
Noise Cutoff302.40
Domain Noise Cutoff302.40
Isology Typeequivalog
HMM Length300
Mainrole CategoryEnergy metabolism
Subrole CategoryOther
Gene Ontology TermGO:0016563: transcription activator activity molecular_function
GO:0019619: protocatechuate catabolic process biological_process
GO:0045893: positive regulation of transcription, DNA-dependent biological_process
AuthorHaft DH
Entry DateJan 10 2005 5:36PM
Last ModifiedFeb 14 2011 3:27PM
CommentMembers of this family are LysR-family transcription factors associated with operons for catabolism of protocatechuate. Members occur only in Proteobacteria.
ReferencesRN [1] RM 15006791 RT Diverse organization of genes of the beta-ketoadipate pathway in members of the marine Roseobacter lineage. RA Buchan A, Neidle EL, Moran MA. RL Appl Environ Microbiol. 2004 Mar;70(3):1658-68.
Genome PropertyGenProp0273: protocatechuate degradation to beta-ketoadipate (HMM)