HMM Summary Page: TIGR02570

AccessionTIGR02570
Namecas_GSU0053
FunctionCRISPR-associated protein GSU0053/csb1, Dpsyc system
Gene Symbolcsb1
Trusted Cutoff38.00
Domain Trusted Cutoff38.00
Noise Cutoff35.00
Domain Noise Cutoff35.00
Isology Typehypoth_equivalog_domain
HMM Length178
Mainrole CategoryMobile and extrachromosomal element functions
Subrole CategoryOther
Gene Ontology TermGO:0003674: molecular_function molecular_function
GO:0043571: maintenance of CRISPR repeat elements biological_process
AuthorHaft DH
Entry DateMay 2 2005 11:28AM
Last ModifiedFeb 14 2011 3:27PM
CommentMembers of this family are found in association with CRISPR repeats and other CRISPR-associated (cas) genes in the genomes of Geobacter sulfurreducens PCA and Desulfotalea psychrophila LSv54 (both Desulfobacterales from the Deltaproteobacteria), Gemmata obscuriglobus (Planctomycete), and Actinomyces naeslundii MG1 (Actinobacteria). This CRISPR/Cas type is designated Dpsych.
ReferencesDR URL http://www.tigr.org/tigr-scripts/CMR2/genome_property_def.spl?prop=2003 RN [1] RT A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/cas subtypes exist in prokaryotic genomes RA Haft DH, Selengut JD, Mongodin EF, Nelsen KE RL PLOS Comput. Biol. 1(6), e60-e69, 2005
Genome PropertyGenProp0469: CRISPR system, Dpsyc subtype (HMM)
GenProp0021: CRISPR region (HMM)