HMM Summary Page: TIGR02582

AccessionTIGR02582
Namecas_TM1809
FunctionCRISPR type III-A/MTUBE-associated RAMP protein Csm3
Gene Symbolcsm3
Trusted Cutoff90.00
Domain Trusted Cutoff80.00
Noise Cutoff88.00
Domain Noise Cutoff75.00
Isology Typeequivalog
HMM Length203
Mainrole CategoryMobile and extrachromosomal element functions
Subrole CategoryOther
Gene Ontology TermGO:0003674: molecular_function molecular_function
GO:0043571: maintenance of CRISPR repeat elements biological_process
AuthorHaft DH
Entry DateMay 11 2005 11:34AM
Last ModifiedFeb 14 2011 3:27PM
CommentMembers of this CRISPR-associated (cas) gene family are found in the mtube subtype of CRISPR/cas locus and designated Csm3, for CRISPR/cas Subtype Mtube, protein 3.
ReferencesDR URL http://www.tigr.org/tigr-scripts/CMR2/genome_property_def.spl?prop=2003 DR URL http://www.tigr.org/tigr-scripts/CMR2/genome_property_def.spl?prop=57305 DR PFAM; PF03787; RAMP superfamily RN [1] RT A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/cas subtypes exist in prokaryotic genomes RA Haft DH, Selengut JD, Mongodin EF, Nelsen KE RL PLOS Comput. Biol. 1(6), e60-e69, 2005 RN [2] RM 11788711 RT A DNA repair system specific for thermophilic Archaea and bacteria predicted by genomic context analysis. RA Makarova KS, Aravind L, Grishin NV, Rogozin IB, Koonin EV. RL Nucleic Acids Res. 2002 Jan 15;30(2):482-96.
Genome PropertyGenProp0318: CRISPR system, III-A/Mtube subtype (HMM)
GenProp0021: CRISPR region (HMM)