HMM Summary Page: TIGR02589

AccessionTIGR02589
Namecas_Csd2
FunctionCRISPR-associated protein Cas7/Csd2, subtype I-C/DVULG
Gene Symbolcas7c
Trusted Cutoff182.25
Domain Trusted Cutoff182.25
Noise Cutoff142.75
Domain Noise Cutoff142.75
Isology Typeexception
HMM Length284
Mainrole CategoryMobile and extrachromosomal element functions
Subrole CategoryOther
Gene Ontology TermGO:0003674: molecular_function molecular_function
GO:0003674: molecular_function molecular_function
GO:0003674: molecular_function molecular_function
GO:0043571: maintenance of CRISPR repeat elements biological_process
GO:0043571: maintenance of CRISPR repeat elements biological_process
GO:0043571: maintenance of CRISPR repeat elements biological_process
AuthorHaft DH
Entry DateMay 25 2005 3:36PM
Last ModifiedFeb 14 2011 3:27PM
CommentThis model represents one of two closely related CRISPR-associated proteins that belong to the larger family of TIGR01595. Members are the Csd2 protein of the Dvulg subtype of CRISPR/cas system. CRISPR stands for Clustered Regularly Interspaced Short Palindromic Repeats. The related model is TIGR02590, the Csh2 protein of the Hmari CRISPR subtype.
ReferencesDR URL http://www.tigr.org/tigr-scripts/CMR2/genome_property_def.spl?prop=2003 DR URL http://www.tigr.org/tigr-scripts/CMR2/genome_property_def.spl?prop=57300 RN [1] RT A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/cas subtypes exist in prokaryotic genomes RA Haft DH, Selengut JD, Mongodin EF, Nelsen KE RL PLOS Comput. Biol. 1(6), e60-e69, 2005
Genome PropertyGenProp0021: CRISPR region (HMM)
GenProp0021: CRISPR region (HMM)
GenProp0313: CRISPR system, I-C/Dvulg subtype (HMM)
GenProp0313: CRISPR system, I-C/Dvulg subtype (HMM)
GenProp0021: CRISPR region (HMM)
GenProp0021: CRISPR region (HMM)
GenProp0313: CRISPR system, I-C/Dvulg subtype (HMM)
GenProp0313: CRISPR system, I-C/Dvulg subtype (HMM)
GenProp0021: CRISPR region (HMM)
GenProp0021: CRISPR region (HMM)
GenProp0313: CRISPR system, I-C/Dvulg subtype (HMM)
GenProp0313: CRISPR system, I-C/Dvulg subtype (HMM)