HMM Summary Page: TIGR02592

AccessionTIGR02592
Namecas_Cas5h
FunctionCRISPR-associated protein Cas5, subtype I-B/HMARI
Gene Symbolcas5b
Trusted Cutoff97.00
Domain Trusted Cutoff97.00
Noise Cutoff42.05
Domain Noise Cutoff42.05
Isology Typeexception
HMM Length241
Mainrole CategoryMobile and extrachromosomal element functions
Subrole CategoryOther
Gene Ontology TermGO:0003674: molecular_function molecular_function
GO:0003674: molecular_function molecular_function
GO:0003674: molecular_function molecular_function
GO:0043571: maintenance of CRISPR repeat elements biological_process
GO:0043571: maintenance of CRISPR repeat elements biological_process
GO:0043571: maintenance of CRISPR repeat elements biological_process
AuthorHaft DH
Entry DateMay 26 2005 12:41PM
Last ModifiedFeb 14 2011 3:27PM
CommentThis is a CRISPR-associated protein unique to the hmari subtype of cas genes and CRISPR repeat, which is the only subtype present in Haloarcula marismortui ATCC 43049. The hmari type, though uncommon, is also found in the Aquificae, Thermotogae, Firmicutes, and Dictyoglomi.
ReferencesDR URL http://www.tigr.org/tigr-scripts/CMR2/genome_property_def.spl?prop=2003 DR URL http://www.tigr.org/tigr-scripts/CMR2/genome_property_def.spl?prop=57307 RN [1] RT A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/cas subtypes exist in prokaryotic genomes RA Haft DH, Selengut JD, Mongodin EF, Nelsen KE RL PLOS Comput. Biol. 1(6), e60-e69, 2005
Genome PropertyGenProp0021: CRISPR region (HMM)
GenProp0021: CRISPR region (HMM)
GenProp0320: CRISPR system, I-B subtype, Hmari branch (HMM)
GenProp0320: CRISPR system, I-B subtype, Hmari branch (HMM)
GenProp0021: CRISPR region (HMM)
GenProp0021: CRISPR region (HMM)
GenProp0320: CRISPR system, I-B subtype, Hmari branch (HMM)
GenProp0320: CRISPR system, I-B subtype, Hmari branch (HMM)
GenProp0021: CRISPR region (HMM)
GenProp0021: CRISPR region (HMM)
GenProp0320: CRISPR system, I-B subtype, Hmari branch (HMM)
GenProp0320: CRISPR system, I-B subtype, Hmari branch (HMM)